YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VAP22_ARATH
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNMPLLDIQP RTLQFAVDLK KQTSCVVQLT NTTHHYVAFK VKTTSPKKYC VRPNVGVVAP  60
   61 KSTCEFTVIM QAFKEPPPDM VCKDKFLIQS TAVSAETTDE DITASMFSKA EGKHIEENKL 120
  121 RVTLVPPSDS PELSPINTPK QGAVFEDSIL KDRLYSQSET LAPPQYEGEI VKEPRMVGHD 180
  181 ELKAADNAKE LKTPKMATVD FVEDRYTAND LKATKDSYDS SRMAKETGFD PIRSHKDADD 240
  241 GRAIKATTNL DAPMKKAMDL PRDQGFTNGI AVDSEPKISK ERDVVQLQKT DGQNVRGLDE 300
  301 LKLVKDIEEM KLKVDALESK LKQADSTISK LMEERSISSQ HRQSLQHELA ELRTKKIVKE 360
  361 VHNGFPLLYV CVVAFIAYVI GHFLRT

Type	Start	End	Confidence
Cytoplasmic	1	361	0.60
Transmembrane Helix	362	384	0.81
Non-Cytoplasmic	385	386	0.65