YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LHTL1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	46	0.94
Transmembrane Helix	47	68	0.88
Non-Cytoplasmic	69	73	0.68
Transmembrane Helix	74	95	0.87
Cytoplasmic	96	122	0.86
Transmembrane Helix	123	144	0.59
Non-Cytoplasmic	145	159	0.52
Transmembrane Helix	160	180	0.75
Cytoplasmic	181	187	0.51
Transmembrane Helix	188	211	0.75
Non-Cytoplasmic	212	228	0.77
Transmembrane Helix	229	253	0.79
Cytoplasmic	254	273	0.80
Transmembrane Helix	274	297	0.88
Non-Cytoplasmic	298	313	0.82
Transmembrane Helix	314	339	0.80
Cytoplasmic	340	359	0.82
Transmembrane Helix	360	380	0.88
Non-Cytoplasmic	381	385	0.62
Transmembrane Helix	386	408	0.88
Cytoplasmic	409	416	0.92
Transmembrane Helix	417	439	0.91
Non-Cytoplasmic	440	453	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYIQMTDGVP PPPEQSSLDH RIDELERQKE IDDWLPITSS RNAKWWYSTF HNVTAMVGAG  60
   61 VLGLPFFMAQ LGWGPGIAVL ILSWIITLYT LWQMVEMHEM VPGKRFDRYH ELGQFAFGER 120
  121 LGLYIIVPQQ IIVEVGVCIV YMVTGGQSLK KFHEIACQDC SPIRLSFFIM IFASSHFVLS 180
  181 HLPNFNSISG VSLVAAVMSL SYSTIAWTAT AAKGVQEDVQ YGYKSGTTAS TVLSFFTGLG 240
  241 GIAFAYAGHN VVLEIQATIP STPSNPSKGP MWRGVVVAYV VVALCYFPVA LVGYGVFGNA 300
  301 VLDNVLMSLE TPVWAIATAN LFVVMHVIGS YQIFAMPVFD MVETFLVKKL NFKPSTVLRF 360
  361 IVRNVYVALT MFIGIMIPFF GGLLAFFGGF AFAPTSYFLP CIMWLLIYKP KRFSLSWWTN 420
  421 WVCIVLGVVL MILSSIGGLR QIIIQSKDYS FFS