YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15220327, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.96
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPSFVLLSI VLLLSSSLSD AADFGSPSQP PSMAPTPQPS NSTDCSSVIY SMVDCLSFLT  60
   61 VGSTDPSPTK TCCVGVKTVL NYSPKCLCSA LESSREMGFV LDDTKALAMP KICNVPIDPN 120
  121 CDVSTPAAST PVSPPVESPT TSPSSAKSPA ITPSSPAVSH SPPPVRHSSP PVSHSSPPVS 180
  181 HSSPPTSRSS PAVSHSSPVV AASSPVKAVS SSTASSPRAA SPSPSPSPSI SSSGILLVSK 240
  241 LFIAVVMVSS FLYILA

Type	Start	End	Confidence
Signal Peptide	1	21	0.98
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	232	0.99
Transmembrane Helix	233	255	0.89
Cytoplasmic	256	256	0.95