YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	WAXS9_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEELKNFII VWISAIISVS YCYYISANIK TGVLRLFSVL PICGLFFVLP LFFSSVHFSS  60
   61 STAFYLSEMA SLKLILFAFD QGPLFPVAPN LIQFVCFTCF PIKLQRNPKS QPSQNHFHKR 120
  121 AFAIKIMIFG VVLHVYNYSH FLPQTVLLSL CFLHLYVELE ILLGPLKVLL SMALGCDLEP 180
  181 QFNKPYLATS LQDFWGRRWN LMVSSVLRSG IYNPVRCACQ RPMNSGWARF MGYLVTFLVS 240
  241 GLFHELVYFY ITRETPTWEV TLFFVLNGVC TGTEVAVKRT AFLQRWWPVR SSVSRLLTMG 300
  301 FVVVTGGLLF FPLFIRSGMM ERRANETLFF LDFVKRKFSI F

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.80
Transmembrane Helix	8	27	0.91
Cytoplasmic	28	35	0.71
Transmembrane Helix	36	57	0.90
Non-Cytoplasmic	58	83	0.77
Transmembrane Helix	84	102	0.88
Cytoplasmic	103	120	0.86
Transmembrane Helix	121	138	0.90
Non-Cytoplasmic	139	145	0.64
Transmembrane Helix	146	164	0.70
Cytoplasmic	165	229	0.79
Transmembrane Helix	230	251	0.89
Non-Cytoplasmic	252	259	0.77
Transmembrane Helix	260	277	0.60
Cytoplasmic	278	292	0.47
Transmembrane Helix	293	315	0.89
Non-Cytoplasmic	316	341	0.54