YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	WAXSA_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEELKSFVK VWGSAIISVS YCYYIPSKIK RGVHRLLSVL PVCVLFLVLP LFFVFTIFSS  60
   61 TTAFCLSILA NFKLILFAFD KGPLLPLPTN LFRFICFTCL PIKLQTKPNS QNHLPKWVLP 120
  121 SKVAIFVLLL NIRSYKILLP PILLLGLYPL HLYIVLDVLL TIVNALLTII LRCDLEPHFN 180
  181 EPYLATSLQD FWGHRWNLMV SAIYRPGVYS PVRSVCQHQM RSDWARFMGC MTTFFVSGLI 240
  241 HELVYFYINR EKPTLEVTWF FVLHGVCTAM EIAVKRKMQW SLSPMLLRLI TVGFLVVTGD 300
  301 LLFFGQIERS NMLERRANEA SLFIDFVKRK VFNYTVS

Type	Start	End	Confidence
Cytoplasmic	1	35	0.61
Transmembrane Helix	36	70	0.74
Non-Cytoplasmic	71	83	0.57
Transmembrane Helix	84	102	0.52
Cytoplasmic	103	117	0.63
Transmembrane Helix	118	137	0.67
Non-Cytoplasmic	138	149	0.56
Transmembrane Helix	150	171	0.85
Cytoplasmic	172	223	0.81
Transmembrane Helix	224	245	0.87
Non-Cytoplasmic	246	254	0.73
Transmembrane Helix	255	274	0.85
Cytoplasmic	275	284	0.80
Transmembrane Helix	285	305	0.93
Non-Cytoplasmic	306	337	0.87