YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CHX5_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	62	0.45
Transmembrane Helix	63	84	0.79
Cytoplasmic	85	92	0.47
Transmembrane Helix	93	112	0.54
Non-Cytoplasmic	113	130	0.64
Transmembrane Helix	131	146	0.64
Cytoplasmic	147	162	0.71
Transmembrane Helix	163	182	0.93
Non-Cytoplasmic	183	197	0.86
Transmembrane Helix	198	217	0.88
Cytoplasmic	218	229	0.85
Transmembrane Helix	230	252	0.91
Non-Cytoplasmic	253	258	0.82
Transmembrane Helix	259	277	0.91
Cytoplasmic	278	296	0.76
Transmembrane Helix	297	313	0.96
Non-Cytoplasmic	314	346	0.46
Transmembrane Helix	347	370	0.81
Cytoplasmic	371	383	0.37
Transmembrane Helix	384	409	0.82
Non-Cytoplasmic	410	416	0.36
Transmembrane Helix	417	437	0.66
Cytoplasmic	438	447	0.55
Transmembrane Helix	448	470	0.92
Non-Cytoplasmic	471	815	0.69

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESRNEAYEG AYNATFWGDF SYHGYGFSED GSKFCEQIPI LVNSFGVWEK LDLPIRGMKI  60
   61 WDYSLPHLES VIVLVLCLWQ FFYLSLKKIG LPVPKITSMM IAGAALSQTN LLPNDWTIQH 120
  121 ILFPDDTRPK VPETLGGFAF VFYWFIEGVK MDVGMVRKTG TKVIVTGIAT VILPIIAANM 180
  181 VFGKLRETGG KYLTGMEYRT ILFMQSISAF TGISRLLRDL RINHSEFGRI VISTAMVADG 240
  241 TGFGVNLFAL VAWMDWRVSA LQGVGIIGYV IFMVWVVRPA MFWVIKRTPQ ERPVKECFIY 300
  301 IILILAFGGY YFLKEIHMFP AVGPFLLGLC VPHGPPLGSQ LVEKFESFNT GILLPLFLFF 360
  361 SMLQIDGPWL ANQIGQLRHF DGQLYEALTI IIVVFVAKII FSMIPALLAK MPLTDSFVMA 420
  421 LILSNKGIVE LCYFLYGVES NVLHVKSFTI MATMILVSST ISPVLIHYLY DSSKRFISFQ 480
  481 KRNLMSLKLG SELKFLVCIH KADHISGMIN LLAQSFPLHE STISCYVIHL VELVGLDNPV 540
  541 FISHQMQKAE PGNRSYSNNV LIAFDNFKHY WKSISLELFT CISNPRYMHQ EIYSLALDKQ 600
  601 ASFLMLPFHI IWSLDQTTVV SDDVMRRNAN LNVLRQAPCS VGIFVHRQKL LSAQKSSPSF 660
  661 EVCAIFVGGK DDREALALGR QMMRNPNVNL TVLKLIPAKM DGMTTGWDQM LDSAEVKEVL 720
  721 RNNNNTVGQH SFVEYVEETV NDGSDTSTLL LSIANSFDLF VVGRSAGVGT DVVSALSEWT 780
  781 EFDELGVIGD LLVSQDFPRR GSVLVVQQQQ NVACR