YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|5669003
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLSARKTQR NVGINDKQTW RTWLKDKATA TLKHVLSQKT PSHKALMRDD WMAKATKIAV  60
   61 LGSLFSFAIL PEIANAAMDF SGLKNLAKDV VSFLIFDIGY YLGIAAIAFC GFQAKSGRMS 120
  121 WGQFGWAVAG VFLVFFSPNL VDTIKTGAQT ALK

Type	Start	End	Confidence
Cytoplasmic	1	54	0.95
Transmembrane Helix	55	74	0.87
Non-Cytoplasmic	75	92	0.75
Transmembrane Helix	93	112	0.94
Cytoplasmic	113	121	0.73
Transmembrane Helix	122	141	0.87
Non-Cytoplasmic	142	153	0.81