YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CCC1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	132	0.99
Transmembrane Helix	133	153	0.91
Non-Cytoplasmic	154	166	0.69
Transmembrane Helix	167	190	0.88
Cytoplasmic	191	210	0.84
Transmembrane Helix	211	233	0.88
Non-Cytoplasmic	234	271	0.96
Transmembrane Helix	272	291	0.94
Cytoplasmic	292	299	0.76
Transmembrane Helix	300	319	0.96
Non-Cytoplasmic	320	360	0.96
Transmembrane Helix	361	382	0.82
Cytoplasmic	383	395	0.80
Transmembrane Helix	396	419	0.88
Non-Cytoplasmic	420	435	0.86
Transmembrane Helix	436	459	0.83
Cytoplasmic	460	490	0.89
Transmembrane Helix	491	512	0.89
Non-Cytoplasmic	513	516	0.79
Transmembrane Helix	517	537	0.90
Cytoplasmic	538	550	0.79
Transmembrane Helix	551	574	0.86
Non-Cytoplasmic	575	975	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSGDIEEAG GNGEEEFRSG PRLGGSKYRP VVAHDRAVVE MSSIDPGSSS STLKNIKVVA  60
   61 PGDVGAGVRG PEDGVNGHQK ESKLELFGFD SLVNILGLKS MTGEQIQAPS SPRDGEDISI 120
  121 TQGHPKPPAL KMGTMMGVFV PCLQNILGII YYIRFTWIVG MAGIGQGLVL VFLCGLCTFL 180
  181 TTISLSAIAT NGAMKGGGPY YLIGRALGPE VGISIGLCFF LGNAVAGALY VLGAVETFLK 240
  241 AFPAAGIFRE TITKVNGTAV SESIQSPNSH DLQVYGIVVT ILLCFIVFGG VKMINRVAPA 300
  301 FLVPVLLSIF CIFIGIFLAK TDDPDNGITG LRLKSFKDNW GSAYQMTNDA GIPDPTGGTY 360
  361 WSFNELVGLF FPAVTGIMAG SNRSASLKDT QKSIPVGTLA ATLTTTSLYL ISVLFFGAVA 420
  421 TRDKLLTDRL LTATIAWPFP AIVHVGIILS TLGAALQSLT GAPRLLAAIA NDDILPILNY 480
  481 FKVADTSEPH IATLFTAFIC IGCVVIGNLD LITPTVTMFY LLCYSGVNLS CFLLDLLDAP 540
  541 SWRPRWKYHH WSLSFVGASL CIVIMFLISW SFTVVAIALA SLIYKYVGLK GKAGDWGDGF 600
  601 KSAYFQLALR SLRSLGANQV HPKNWYPIPL VFCRPWGQLP ENVPCHPKLA DFANCMKKKG 660
  661 RGMSIFVSIL DGDYYECAEE AKEACKQLAT YIEYKRCEGV AEIVVAPNMT EGFRGIIQTM 720
  721 GLGNLKPNIV VMRYPEIWRR ENLTEIPSTF VGIINDCITA NKAVVIIKGL DEWPNEYQRQ 780
  781 YGTIDLYWIV RDGGLMLLLS QLLLTKESFE SCKIQLFCIA EEDSDAEALK ADVKKFLYDL 840
  841 RMHAEVIVVT MKSWDIRSEG NSQEDSLEAF DAAQRRISDY LGEIKRQGSN PLLANGKPMV 900
  901 VNEQQVEKFL YTMLKLNSTI LSYSRMAAVV LVSLPPPPLN HPAYFYMEYM DLLVENVPRM 960
  961 LIVRGYHRDV VTLFT