YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VA726_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGQQSLIYSF VARGTVILAE YTEFKGNFTS VAAQCLQKLP SSNNKFTYNC DGHTFNYLAD  60
   61 NGFTYCVVVI ESAGRQIPMA FLERVKEDFN KRYGGGKAST AKANSLNKEF GSKLKEHMQY 120
  121 CADHPEEISK LSKVKAQVTE VKGVMMENIE KVLDRGEKIE LLVDKTENLR SQAQDFRTQG 180
  181 TKMKRKLWFE NMKIKLIVFG IIVALILIII LSVCHGFKCT

Type	Start	End	Confidence
Cytoplasmic	1	193	0.94
Transmembrane Helix	194	215	0.93
Non-Cytoplasmic	216	220	0.74