YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47076798
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNVTDLLTKE TMILELRAKT KEEVIEELAA KLAEAGAVSD MEAFKRAIWA REKQSTTGVG  60
   61 DGVAIPHAKT AAVKRPAVAF GRSAAGIDYE SLDGQPSHLF FMIAAPEGGE QTHLQALAKL 120
  121 SSLLMDASFR ARLENASDEE EILRLFKEKE NKEEEPSLQG APSGGGRKVL AVTACPTGIA 180
  181 HTYMAADALK AKAAEMGVSI KVETNGSDGV KNALTAQEIE EATAIIVAAD KQVEMDRFDG 240
  241 KHVIQVPVSQ AIREPEKLIE QALRQDAPIY RASGAARGSA GAAKPRTGFY KHLMNGVSNM 300
  301 LPFVVGGGIL IALSFTFGIK AFDPKDPSYH PFAKLLMDIG GGNAFALMVP VLAAFIAMSI 360
  361 ADRPGFAPGM VGGFLAANGG AGFLGGLIAG FLAGYLVVGL RKLFSRLPQS LEGIKPVLLY 420
  421 PVFGIFLTGI IMMYVVIDPV KALNEGMKHW LSGMGTANLV LLGAVLGGMM AVDMGGPINK 480
  481 AAYTFGLAMI EAGNFAPHAA IMAGGMVPPL GLALATTFFK KKFTKAEREA GKTCYIMGAS 540
  541 FITEGAIPFA AADPVRVIPS IIVGSAVAGA LTMWFHIGLP APHGGIFVIP IVKGSAWLYM 600
  601 LAILIGSVVT ALMVGLWKKE VEE

Type	Start	End	Confidence
Cytoplasmic	1	295	0.90
Transmembrane Helix	296	319	0.85
Non-Cytoplasmic	320	338	0.81
Transmembrane Helix	339	361	0.88
Cytoplasmic	362	370	0.77
Transmembrane Helix	371	397	0.84
Non-Cytoplasmic	398	416	0.85
Transmembrane Helix	417	437	0.95
Cytoplasmic	438	449	0.81
Transmembrane Helix	450	472	0.85
Non-Cytoplasmic	473	494	0.83
Transmembrane Helix	495	519	0.87
Cytoplasmic	520	556	0.69
Transmembrane Helix	557	578	0.89
Non-Cytoplasmic	579	595	0.55
Transmembrane Helix	596	617	0.93
Cytoplasmic	618	623	0.58