YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|47076396
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.49
Topology Confidence: 0.49
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEREWFLPFK VLGLGIWMLI ATSCSATLSP SGVNYEVVAL IAIKTGLHDP YNVLENWDVN  60
   61 SVDPCSWRMV TCSPDGYVSA LGLPSQSLSG TLSPGIGNLT NLQSVLLQNN AISGHIPAEI 120
  121 GKLERLQTLD LSNNKFNGDI PSTLGDLRNL NYLRLNNNSL SGQIPESLSK VDGLTLVDVS 180
  181 FNNLSGRPPK LPARTFKVIG NPLICGQSSE NNCSVIYPEP LSFPPDAGKG QSDAGAKKHH 240
  241 VAIAFGASFG ALFLIIVLVS LIWWRYRRNQ QIFFDLNDNY DPEVCLGHLR RYTYKELRTA 300
  301 TDHFNSKNIL GRGGFGIVYK GSLNDGTIVA VKRLKDYNAA GGEIQFQTEV EMISLAVHRN 360
  361 LLRLWGFCST ENERLLVYPY MPNGSVASRL KDHVHGRPVL DWSRRKRIAL GTARGLVYLH 420
  421 EQCDPKIIHR DVKAANILLD EDFEAVVGDF GLAKLLDHRE SHVSTAVRGT VGHIAPEYLS 480
  481 TGQSSEKTDV FGFGILLLEL ITGQKAVDFG RGANQKGVIL DWVKTLHQEG KLNLMVDKDL 540
  541 KNNFDRVELE EMVQVALLCT QFNPSHRPKM SEVLRMLEGD GLAEKWEASQ RNDTPRYRTH 600
  601 ENTPQRYSDF IEESSLIVEA MELSGPR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle