YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VTI12_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDVFEGYER QYCELSTNLS RKCHSASVLS NGEEKKGKIA EIKSGIDEAD VLIRKMDLEA  60
   61 RSLQPSAKAV CLSKLREYKS DLNQLKKEFK RVSSADAKPS SREELMESGM ADLHAVSADQ 120
  121 RGRLAMSVER LDQSSDRIRE SRRLMLETEE VGISIVQDLS QQRQTLLHAH NKLHGVDDAI 180
  181 DKSKKVLTAM SRRMTRNKWI ITSVIVALVL AIILIISYKL SH

Type	Start	End	Confidence
Cytoplasmic	1	198	0.97
Transmembrane Helix	199	218	0.96
Non-Cytoplasmic	219	222	0.75