YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CSLAA_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.41
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTFLKSLIF LQDSCLAFLS LMFHRGSSED AAEALKKLET SINGARISFD TTWTREFRSL  60
   61 FIVPLFKCLV AFCLIISLLV FIEGIYMNLV VLYVKVFERK PEKVYRWEAM QEDIELGHET 120
  121 YPMVLVQIPM YNEKEVLQLS IGAACRLIWP LDRLIVQVLD DSTDQTIKEL VNTECAKWES 180
  181 KGVNIKCERR DNRNGYKAGA LKEGMKHNYV KLCNYVVIFD ADFQPEPDYL QHSVPFLVHN 240
  241 PEVALVQARW RFMNANKCLM TRMQEMSLNY HFMAEQESGS TRHAFFSFNG TAGVWRMAAM 300
  301 EEAGGWHDRT TVEDMDLAVR AGLLGWKFVF LNDLTVKSEL PSKFKAFRFQ QHRWSCGPAN 360
  361 LFRKMIMEII RNKRVTIWKK LYLVYSFFFL RKIIVHCFTF IFYCVILPTS VFFPEVNIPA 420
  421 WSTFYIPSMI TLCIVIATPR SFYLVIFWIL FENVMSMHRT KGTFIGILER QRVNEWVVTE 480
  481 KLGDALKTKL LPRIGKPSNM FLERVNSKEI MVGIYILCCA CYGLFFGNTL LYLYLFMQAV 540
  541 AFLISGVGFV GT

Type	Start	End	Confidence
Signal Peptide	1	28	0.40
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	62	0.82
Transmembrane Helix	63	90	0.74
Cytoplasmic	91	387	0.89
Transmembrane Helix	388	412	0.81
Non-Cytoplasmic	413	427	0.78
Transmembrane Helix	428	451	0.90
Cytoplasmic	452	509	0.97
Transmembrane Helix	510	526	0.90
Non-Cytoplasmic	527	529	0.44
Transmembrane Helix	530	551	0.62
Cytoplasmic	552	552	0.51