YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PTR9_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	31	0.91
Transmembrane Helix	32	52	0.53
Non-Cytoplasmic	53	71	0.55
Transmembrane Helix	72	95	0.76
Cytoplasmic	96	103	0.62
Transmembrane Helix	104	125	0.89
Non-Cytoplasmic	126	141	0.66
Transmembrane Helix	142	160	0.72
Cytoplasmic	161	187	0.91
Transmembrane Helix	188	208	0.92
Non-Cytoplasmic	209	215	0.82
Transmembrane Helix	216	237	0.94
Cytoplasmic	238	318	0.97
Transmembrane Helix	319	339	0.89
Non-Cytoplasmic	340	359	0.87
Transmembrane Helix	360	381	0.88
Cytoplasmic	382	396	0.93
Transmembrane Helix	397	418	0.90
Non-Cytoplasmic	419	445	0.90
Transmembrane Helix	446	469	0.83
Cytoplasmic	470	479	0.92
Transmembrane Helix	480	502	0.92
Non-Cytoplasmic	503	525	0.91
Transmembrane Helix	526	546	0.95
Cytoplasmic	547	557	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSISGAVDEA GTPLLAVTVD YRNKPAVKSS SGGWRSAGFI IGVEVAERFA YYGISSNLIT  60
   61 YLTGPLGQST AAAAANVNAW SGTASLLPLL GAFVADSFLG RFRTILAASA LYIVGLGVLT 120
  121 LSAMIPSDCK VSNLLSSCSP RFQVITFFSA LYLVALAQGG HKPCVQAFGA DQFDEKEPEE 180
  181 CKAKSSFFNW WYFGMCFGTL TTLWVLNYIQ DNLSWALGFG IPCIAMVVAL VVLLLGTCTY 240
  241 RFSIRREDQS PFVRIGNVYV AAVKNWSVSA LDVAAAEERL GLVSCSSSQQ FSFLNKALVA 300
  301 KNGSCSIDEL EEAKSVLRLA PIWLTCLVYA VVFAQSPTFF TKQGATMERS ITPGYKISPA 360
  361 TLQSFISLSI VIFIPIYDRV LIPIARSFTH KPGGITMLQR IGTGIFLSFL AMVVAALVEM 420
  421 KRLKTAADYG LVDSPDATVP MSVWWLVPQY VLFGITDVFA MVGLQEFFYD QVPNELRSVG 480
  481 LALYLSIFGI GNFLSSFMIS IIEKATSQSG QASWFANNLN QAHLDYFYWL LACLSFIGLA 540
  541 SYLYVAKSYV SKRLDTS