YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PHT18_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.98
Transmembrane Helix	16	39	0.84
Non-Cytoplasmic	40	60	0.83
Transmembrane Helix	61	82	0.91
Cytoplasmic	83	90	0.90
Transmembrane Helix	91	112	0.94
Non-Cytoplasmic	113	121	0.75
Transmembrane Helix	122	141	0.90
Cytoplasmic	142	155	0.81
Transmembrane Helix	156	180	0.88
Non-Cytoplasmic	181	200	0.92
Transmembrane Helix	201	220	0.95
Cytoplasmic	221	288	0.94
Transmembrane Helix	289	311	0.80
Non-Cytoplasmic	312	330	0.92
Transmembrane Helix	331	353	0.87
Cytoplasmic	354	363	0.79
Transmembrane Helix	364	384	0.92
Non-Cytoplasmic	385	394	0.89
Transmembrane Helix	395	417	0.89
Cytoplasmic	418	429	0.84
Transmembrane Helix	430	452	0.85
Non-Cytoplasmic	453	472	0.84
Transmembrane Helix	473	492	0.98
Cytoplasmic	493	534	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPIKVLSSLD VARTQWYHFK AIIVAGMGLF TDAYDLFCIA PVMKMISHVY YNGDSINTAV  60
   61 LSTSYAIALL GTATGQLVFG YLGDRVGRRR VYGLCLIIMI LSSFGCGFSV CTTRRSCVMV 120
  121 SLGFFRFFLG LGIGGDYPLS ATIMSEFANK RTRGAFIAAV FSMQGLGILV SSAVTMAVCV 180
  181 AFKRSGGGLE VDAAAPTEAD LAWRLILMIG ALPAALTFYW RMLMPETARY TALVENNIVQ 240
  241 AAKDMQRVMS RSHISDEATT DPPPPPPPPS YKLFSRCFFR LHGRDLFAAS FNWFLVDIVF 300
  301 YTSNLLLSHI FSHYSKKPST AENVYDAAFE VAELGAIIAA CSTIPGYWFT VYFIDKIGRV 360
  361 KIQIMGFFFM AVIYLVAGIP YSWYWSKHEH NNKGFMVLYG LVFFFCNFGP NTTTFIIPAE 420
  421 HFPARFRSTC HGISGAAGKL GAIVGTVGFL WATKKMESDD KNQIYPEVNR MRIAFLILGG 480
  481 VCIAGILVTY FFTKETMGRS LEENEHDQDN NAESEDEPQI VDGQSSVSTL LQTR