YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GDL4_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.98
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQDRVSGSL SSSKISRCVL FLSLFCFFLL TMHASANRLQ RVPNPGPSPA PEPKPCPSPG  60
   61 PNPAPATTKR THNTTFPAIF AFGDSILDTG NNDYILTLIK ANFLPYGMNF PDKVPTGRFC 120
  121 NGKIPSDFIA DYIGVKPVVP AYLRPGLTQE DLLTGVSFAS GGSGYDPLTP IVVSAIPMSK 180
  181 QLTYFQEYIE KVKGFVGKEK AEHIISKGLA IVVAGSDDLA NTYYGEHLEE FLYDIDTYTS 240
  241 FMASSAASFA MQLYESGAKK IGFIGVSPIG CIPIQRTTRG GLKRKCADEL NFAAQLFNSK 300
  301 LSTSLNELAK TMKNTTLVYI DIYSSFNDMI QNPKKYGFDE IDRGCCGTGL LELGPLCNKY 360
  361 TSLLCKNVSS FMFWDSYHPT ERAYKILSQK FVENDMGPFY DN

Type	Start	End	Confidence
Signal Peptide	1	36	0.98
N-region	1	27
H-region	28	33
C-region	34	36
Cleavage Site	36	37
Non-Cytoplasmic	37	402	0.99