YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MTP10_ARATH
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLNSYIFFL FLTTSPRNTF FGIRTHSDRI MATEHITRTG DEYNVELLPS DDDAPPLESS  60
   61 WRLNLDAFQL PSSTGGRHDG RTRFSRYFRT PRKERRVSEY YKKQERLLEG FNEMETIHEN 120
  121 GFASGVPTEE EMKKLAKSER LAVHISNATN LVLFVAKVYA SMESRSMAVI ASTLDSLLDL 180
  181 LSGFILWFTA NAMRKPNQFH YPIGKRRMQP VGIIVFASVM ATLGLQVLLE SGRQLVAKSG 240
  241 IHMNSTEEKW MIGIMVSVTI VKFLLMLYCR GFQNEIVRAY AQDHLFDVVT NSIGLATAVL 300
  301 AVKFYWWIDP TGAILIALYT IATWARTVLE NVHSLIGRSA PPDFLAKLTF LIWNHHEQIK 360
  361 HIDTVRAYTF GSHYFVEVDI VLPEDMRLQE AHNIGETLQE KLEQLAEVER AFVHIDFEFT 420
  421 HRPEHKCN

Type	Start	End	Confidence
Cytoplasmic	1	140	0.91
Transmembrane Helix	141	160	0.86
Non-Cytoplasmic	161	167	0.82
Transmembrane Helix	168	190	0.91
Cytoplasmic	191	209	0.90
Transmembrane Helix	210	229	0.96
Non-Cytoplasmic	230	249	0.91
Transmembrane Helix	250	269	0.95
Cytoplasmic	270	283	0.81
Transmembrane Helix	284	306	0.76
Non-Cytoplasmic	307	310	0.60
Transmembrane Helix	311	329	0.82
Cytoplasmic	330	428	0.86