YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KEA6_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	35	0.98
N-region	1	26
H-region	27	32
C-region	33	35
Cleavage Site	35	36
Non-Cytoplasmic	36	176	0.98
Transmembrane Helix	177	197	0.85
Cytoplasmic	198	202	0.72
Transmembrane Helix	203	222	0.85
Non-Cytoplasmic	223	228	0.83
Transmembrane Helix	229	249	0.90
Cytoplasmic	250	256	0.86
Transmembrane Helix	257	280	0.90
Non-Cytoplasmic	281	286	0.86
Transmembrane Helix	287	307	0.94
Cytoplasmic	308	318	0.82
Transmembrane Helix	319	338	0.95
Non-Cytoplasmic	339	351	0.73
Transmembrane Helix	352	372	0.89
Cytoplasmic	373	392	0.78
Transmembrane Helix	393	409	0.76
Non-Cytoplasmic	410	413	0.50
Transmembrane Helix	414	433	0.51
Cytoplasmic	434	444	0.57
Transmembrane Helix	445	465	0.89
Non-Cytoplasmic	466	469	0.60
Transmembrane Helix	470	490	0.87
Cytoplasmic	491	499	0.52
Transmembrane Helix	500	521	0.87
Non-Cytoplasmic	522	530	0.58
Transmembrane Helix	531	555	0.80
Cytoplasmic	556	597	0.64

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVEGRRRRRF SLSSQQLALL LLLLSFFLCF SVASPRAISD SDLLDETVAN SSSSVASLNA  60
   61 SSSSSLVKPK EGSFADIIDR ALEKEFNESD QNEVADPGSF NNSVAGQQAV LETVARVKST 120
  121 KKNETKEEKR FQLHDVFNLN NDNRAEDTPT LIDRKDNVFI ISNSKSKYPV LQLDLRLISD 180
  181 LVVVIVSATC GGIAFACAGQ PVITGYLLAG SIIGPGGLNF ISEMVQVETV AQFGVVFLLF 240
  241 ALGLEFSTAK LKVVRSVAVL GGLLQILLFM FLCGITVSLC GGKRSEGVFV GAFLSMSSTA 300
  301 VVLKFLMEKN STNSLHGQVT IGILILQDCA VGLLFALLPV LEGNSGIVHG MLSIGKVVVL 360
  361 LLSFLAVLSI LSRTCIPWLL KLMVSLSSQT NELYQLAAVA FCLLVAWCSD KLGLSLELGS 420
  421 FAAGVMISTT DLAEHTLEQI EPIRNLFAAL FLASIGMLVN VHFLWTHVDI LLASVILVII 480
  481 IKTTIVTTVV KGFGYNNKTA LLVGISLAQI GEFAFVLLSR ASNLHLIEGK LYLLLLGTTA 540
  541 LSLVTTPLVF KMIPAVVHLG ILLKWFSPDS TIEKGEIVRS ESGKQRMILM SRQSHSS