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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: WIT1_ARATH
Protein type: Transmembrane
Type Confidence: 0.91
Topology Confidence: 0.62
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METETEHDRT VSVDDNDSLV PEPSSTKESF FEDLSLTGQV MNPQLSSAGE VLTKVELDFA  60
   61 FVSEKLVNLS LLTMQLGTRE NDFESFVSKK EEDEEEPSSN VDDDDDSAEK ALEFDLLSSI 120
  121 LNSEVKELES LLGFLQNEIQ SARVMISPFQ HDGEAFLDLE GKLNDTEQSL GQLMEQVVEM 180
  181 KKQSSNFQRL SSGLDEQGSW SGGQTSVSQN DGEFGDLSAK INMQTADQQR NVLRMLEKSL 240
  241 AKEMELEKKL SESRNTEREL EMKLYSSEQD VVYMEEVTED AFSRWLEADN AAEVFKGTSK 300
  301 EMSGKLQILQ FNLSGSFKRE DNLKSKLVDS KERLEAKECA LHKLDSSNAR LADFLVAQTE 360
  361 GLKESLQEAE EKLILLNTEN STLSEKVSSL EEQLNEYGIQ TEDADATSGA LITDLERINE 420
  421 ELKDKLAKTE ARAEETESKC KILEESKKEL QDELGNFRDK GFTIHKLASL EKHLRDSDLQ 480
  481 LEHAVAAVEA SKEKQNLLYS TVSDMEDVIE DLKSKVLKAE NRADITEEKL IMVSESNAEV 540
  541 NEELKFFKGR LKEGEKYLQQ AEERKLRTAK DIGVHNKIMK KLVMQLAAER ERLHKQITNL 600
  601 SRENCVLMVK LKKVGKTGYM ESGNGSEVSP KSDQNASSCH QGSRLQATFI SLTNPEEEET 660
  661 GSKSDIGSVR RLDVGALRFK HILVAILVIL ISSIAYVISQ QNM

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle