YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MRS27_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPDGELVPV DSSAVVTAKR KTSQLSRSWI SIDATGQKTV LDVDKHVIMH RVQIHARDLR  60
   61 ILDPNLFYPS AILGRERAIV LNLEHIKAII TAEEVLIRDS SDENVIPVLE EFQRRLPVGN 120
  121 EAHGVHGDGD LGEEDESPFE FRALEVALEA ICSFLAARTT ELEKFAYPAL DELTLKISSR 180
  181 NLERVRKLKS AMTRLTARVQ KVRDELEQLL DDDGDMADLY LTRKLVGASS SVSVSDEPIW 240
  241 YPTSPTIGSM ISRASRVSLV TVRGDDETDV EELEMLLEAY FMQIDSTLNK LTELREYIDD 300
  301 TEDYINIQLD NHRNQLIQLE LMLSAGTVCV SVYSMIAGIF GMNIPNTWNH DHGYIFKWVV 360
  361 SLTGTFCIVL FVIILSYARF RGLIGS

Type	Start	End	Confidence
Cytoplasmic	1	320	0.77
Transmembrane Helix	321	342	0.91
Non-Cytoplasmic	343	353	0.71
Transmembrane Helix	354	378	0.87
Cytoplasmic	379	386	0.71