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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|7458799
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.50
Topology Confidence: 0.59
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKYIYIISL AAFFISFDII CATKIEENKN KNATKLNNYN PYHNLEESDF DNSNFLNEKK  60
   61 YDNKNNSINN EKYIQPHSIN NNFLQNKKDI NNTKITLYNE YNKTNNIDNF RNFNHEHEKT 120
  121 NNILIENNNS FLQITAISEI NKDTLDTVDT IYGVNDNESV LWFFYKLLYS VEYIKKMLSN 180
  181 LNIGLSSEQT KIKTDQNVVI NDVRQTNASC YSEKNELINK LGNIHNPFYN FHNDRSIDDY 240
  241 NLYTSSKNNF VNCLKKGFEN IKKKTNDIIS YEEKLYTDKC KNSSKLKNTT KKPSEFCKNV 300
  301 MNLNVSRKNS WEVPKNNEII SFIDFLIEKL KSNNYPMTLV TKLDFIKKQF EDIKNKHNKH 360
  361 IKICKQEEIV VNKCTNNIDN NNCDKHFNEI KKIAESYSII FYNYTILENL ESVNITYKES 420
  421 LDYFFNSLGK LLINKVDSDG NIIEENDIDN FDLSKPKNNF KLLEGELNGV FENKWNDYKN 480
  481 NKNLDQFKDT MKKIILLIIQ YMNEFKGLND AMTKLKNEGI SQKFVINNQI KQKFDKSTYD 540
  541 EKKEGFESSL ELAKNWEKKK LEIITELKKK NEETVQLDIK IRELIKQIKD IIEEQKIVND 600
  601 LKLELNKKIK EITEKIEYIK KAVDLKKEIE KDNVYIDELA KEPPYQITKY IEKKNEIYNT 660
  661 IKSDFDKIYV GDIEQLYNEM FSVVQESNIE HIENKTEILT LKTKIDNVYN KIQNMETETV 720
  721 KSHLKNIETN NKLSETILDI IKYIYGEITN ELNKTLEDFK NKEKGLSNKI DEYAKENVQL 780
  781 NVYKSNILEI KKHYNDQINI DNIKEKEAKQ NYDQFKEHMK TIPPNENEIS KTINEIKIMK 840
  841 DEFLSKVNKY NDFDKVYKEK VESEHNKFTE LTNKIKTEVS DEEIKKYENK FNDSKSLINE 900
  901 TKKSIEEEYQ NINTLKKVDD YIKVCLNTNE LITNCHNKQT TLKDKLNQNI KTIKETNSID 960
  961 KIYTDKFENI LTDKKTELET KFTGLSLNNH ESNNKELLTY FYDLKANLGK NKENMLYKQF1020
 1021 NEKEKAVEDI KKKNVDINKI VSNIEITIYT SIYNINEDTE NEIGKSIELL NTKVLEKVKA1080
 1081 NVTNLNEIKE KLKDYDFQDF GKEKNIKYPD ENKIKNDIDT LNQKIDKSIE TLTEIKKNSE1140
 1141 NHIDEIKGQI DKLKKVPNKT MFNEDPKEIE KKIENIVEKI DKKKNIYKEI DKLLNEISKI1200
 1201 ENDKTSLEKL KNINLSYGKS LGNLFLQQID EEKKKAEHTI KAMEAYIDDL DNIKKKSQEI1260
 1261 EKEMNINMDI KMDIHKEMKA LNISHDDYKI YHTTSKNHEE KISDIRKNSL KIIQDFSEES1320
 1321 YINDIKKELE KNVLESQNNN TDINQYLSKI ENIYNILKLN KIKKIIDKVK EYTDEIEKNN1380
 1381 KKINAELSNS EKIITQLKEN SSLKECQSKI KSTIDDNYVS ECIKNITNLK TYIVNEKNNI1440
 1441 NTYFKNAEEY NQNVSLNFNN IEMADTKSQY ILNIKKNNGT NNTDYNIKEL KEHKKKSNVY1500
 1501 KDEAGKNTQE IKKNKELFEK YEQEVTVLLN KYYAVELKNK FDKTKNYSEQ IIKEIKDAHN1560
 1561 TFTSQADKSE KKMNEIKNEQ IRIEDEVAKN NKSNKAILDI QLSVEPFKIK FLKIKDLRTK1620
 1621 SDDCLKETKD IETKISNLSI DTQETKLIEN KNILNTLEKL LESLKNQKKN IEDQKKELDE1680
 1681 VNSKIKNIES NVNQHKKNYE IGIVEKINEI AKANKDQIES TQKLIIPTIK NLISPFKAND1740
 1741 LEGIDTNKNL GKYNTEMNNI YEEFIKSYDL ITHYLETVSK EPITYEQIKN KRITAQNELL1800
 1801 TNIKNVNKAK SYLDDIEANE FDRIVTHFKN KLNDVNDKFT NEYSKVNKGF DNISNSINNV1860
 1861 KKSTDENLLL NILNQTKEMY ANIVSKKYYS YKYEAENIFI NIPKLANSLN IQIKSSSGID1920
 1921 LFKNINIAIL PYLDSQKKDT LTFIPSPEKT SETYTKISDS YNTLLDILKR SQELQKKEQQ1980
 1981 ALNLIFENRL LHDKVQATNE LKDTLSDLKN KKEQILNKVK LLLHKSNELN KLSCNSQNYD2040
 2041 TILESSKYDK IKEKSNNYEK EKENLGINFD VKAMEEQFNN DIKDIEKLEN NYKHSEKDNY2100
 2101 NFSEENNNIL QSKKKLKELT NAFNAEIKKI EDKIIEKNGL INKLIETRKD CMLFTYKTLV2160
 2161 ETLKIKTTDY TKFITSATKF SKEFLKYIDA TSNSLNDDIN TLQTKYDLNQ INKHVASMVA2220
 2221 DATNDNNNLI EKEKEATKTI NNLTELFTID SNKIDADGLH NNKIQIIYFN SELHKSIDSI2280
 2281 KQLYKKMHAF KLLNIGHINK KYFDISKEFD NILQLQESEL TANLNDLKEI GQKISDKKKQ2340
 2341 FLHALSETPI PNFNTLKEIY HDIVKYKNQI DEIENITNEE NENITLYMDI ITKLMKKVQS2400
 2401 ILNFVTTYEN DSNIIKQHIQ DNNENDVSKI KESLETTIQS FQKILNKLNE IKAQFYDNNN2460
 2461 INNVISTISQ DVNDVKKHIS KDLTIENELI QIQKSLEDIK KSTYDIRSEQ ITKYVNPIHD2520
 2521 YVEQQTKKIQ NNPNKDEIDD LIQEIVNYNK ESELKLPTII NNKDNVTPII SRIDKVINLI2580
 2581 KSEYNNNDNV SYNVAKKLEE DANNIIRDLD TSHNMLNDLI QKNFKIIDDL KNKKQEIENR2640
 2641 NNLQTINREQ EITQTEHVNN TYHHDINDIN DVIDINDIND TNDINQNHQN SSSDKKDSSK2700
 2701 TRNTGNTIRY AGAIAFGLVT FYVIIRIKEK KDKDEMEFDK SKGFYDGGES TLFEREDEVI2760
 2761 EIDMNEDLSF N

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