YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30697388, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATEEKPLNS LDLSHDDSSP ASNQAEGSSA ITEDTSANVQ QWRRKNLSLQ IPSRAAGLSP  60
   61 EDSVVIKMPP TPSPTPRRVN FALTSSSPGP TPTSSSVLPR GKSSLKNLLP KAGCKPKTSN 120
  121 TDIEKGQGNA CSPPASQEKA SISRSLSLSK LFTPRIKRTS SLPVTPVILS NSESAHGGTS 180
  181 VAPQTPNRKG SVHIARSRSV PLNDKELSLK GMDSFFRVIP STPRVKEGDV FSNASEAGNT 240
  241 ETGDADGEDI PEDEAVCRIC LVELCEGGET LKMECSCKGE LALAHKDCAL KWFTIKGNKT 300
  301 CEVCKQEVKN LPVTLLRIQS LRNSGVPQLD VSGYRVWQEV PVLVIISMLA YFCFLEQLLV 360
  361 ENMGTGAIAI SLPFSCILGL LASMTASTMV LEYSYAVMRR FVWIYASVQF ALVVLFAHIF 420
  421 YSVVKLQPVL SVLLSTFAGF GVCICGSSVM VEFVRWRRRW RARRLEQQLN HALTLSQPPQ 480
  481 PLDPTTSLHH SNTS

Type	Start	End	Confidence
Cytoplasmic	1	339	0.85
Transmembrane Helix	340	359	0.77
Non-Cytoplasmic	360	366	0.77
Transmembrane Helix	367	391	0.86
Cytoplasmic	392	400	0.94
Transmembrane Helix	401	421	0.96
Non-Cytoplasmic	422	431	0.79
Transmembrane Helix	432	454	0.93
Cytoplasmic	455	494	0.98