YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GRIK2_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRDSFLFAR TIGCFGCFGS SGSRNQQSPK PYDDDTHSCD SDVTSTARGE EEEDEEEVEQ  60
   61 KSRSKRSEEI LKYRLDNGLI CRHIPVRETN ELIRGEDENG DKTINEYVRV CKIGSGSYGK 120
  121 VVLYRSTLDG QYYAIKAFHK SHLLRLRVAP SETAMSDVLR EVMIMKILEH PNIVNLIEVI 180
  181 DDPETDHFYM VLEYVDGKWV YDGSGPPGAL GEKTARKYLR DIVTGLMYLH AHDVIHGDIK 240
  241 PDNLLVTSSG TVKIGDFSVS QVFKDDDDQL RRSPGTPVFT APECCLVSGI TYSGRAADTW 300
  301 AVGVTLYCMI LGQYPFLADT LQDTYDKIVN NPLIIPDGLN PLLRDLIEGL LCKDPSQRMT 360
  361 LKNVSEHPWV IGEDGHVPEY FCWCKRNAAS KIEEGEANGI SETSDPN

Type	Start	End	Confidence
Signal Peptide	1	22	0.61
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	407	0.99