YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46359651
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSSSSSTTD TLHSFMEALL IDQYFLGWIF AFLFGFLLLL NFKRKREKNN STEFGTDDSN  60
   61 GYYTPENIAG STDVIIVGAG VAGSALAYTL AKDGRRVHVI ERDLTEQDRI VGELLQPGGY 120
  121 LKLIELGLED CVNEIDAQRV FGYALYMDGK NTRLSYPLEK FHSDVAGRSF HNGRFVQRMR 180
  181 EKAASLPNVR MEQGTVTSLV EKKASVKGVQ YKTKDGQELS AFAPLTIVCD GCFSNLRRSL 240
  241 CNPKVEVPSC FVGLILENID LPHVNHGHVI LADPSPILFY KISSTEIRCL VDVPGQKVPC 300
  301 ISNGELANYL KTVVAPQVPK QLYNSFIAAV DKGNIRTMPN RSMPADPHPT PGALLLGDAF 360
  361 NMRHPLTGGG MTVALSDIVL IRDLLRPLRD LHDSSTLCKY LESFYTLRKP VASTINTLAG 420
  421 ALYKVFCASP DKARQEMRNA CFDYLSLGGI CSQGPIALLS GLNPRPISLF LHFFAVAIYG 480
  481 VGRLLIPFPS PKRMWLGARL ILGASGIIFP IIKSEGLRQM FFPATVPAYY RAPPIH

Type	Start	End	Confidence
Non-Cytoplasmic	1	19	0.80
Transmembrane Helix	20	42	0.88
Cytoplasmic	43	439	0.86
Transmembrane Helix	440	459	0.80
Non-Cytoplasmic	460	467	0.70
Transmembrane Helix	468	487	0.93
Cytoplasmic	488	494	0.88
Transmembrane Helix	495	513	0.91
Non-Cytoplasmic	514	536	0.85