YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TET15_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADNAQVVPV EEPAATATAT ATATATTEPE AKSSDQMESQ SDNKPPMGTL MALVNILAAG  60
   61 VLPIFTFVLS LTLLGYAVWL LYMRSYDCED ILGLPRVQTL ASVGLLAVFV VSNAALFLRR 120
  121 KFPMPALVVM VVVLLLMLFI GLAYAGVNEM QSRRFPATRM WFKLKIMDDH VTWNNIKSCV 180
  181 YDKGACNDLI YGSPNEKPYN RRKMPPIKNG CCMPPETCNM DAINATFWYR RKDEGPPSSM 240
  241 NLMYGDEMMV GRISDCQLWR NDWSILCYDC RSCKFGFIRS VRRKWWQLGI FLIVISILLL 300
  301 MSHLLIFLAT FWERFKG

Type	Start	End	Confidence
Non-Cytoplasmic	1	55	0.63
Transmembrane Helix	56	80	0.89
Cytoplasmic	81	96	0.57
Transmembrane Helix	97	118	0.88
Non-Cytoplasmic	119	125	0.56
Transmembrane Helix	126	147	0.94
Cytoplasmic	148	284	0.69
Transmembrane Helix	285	309	0.88
Non-Cytoplasmic	310	317	0.61