YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|103373
Protein type:	Transmembrane
Type Confidence:	0.77
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALSGQDWRR HQSHRQHRNH RTQGNHQKLI STATLTLFVL FLSSWIAYAA GKATVPAPLV  60
   61 EGETESATSQ DFNSSSAFLG AIASASSTGS GSGSGSGSGS GSGSGSYGLA SMNSSPIAIV 120
  121 SYQGITSTNL GDSNTTLVPL SDTPLLLEEF AAGEFVLRPL TSIFVSIVLL IVILGTVVGN 180
  181 VLVCIAVCMV RKLRRPCNYL LVSLALSDLC VALLVMPMAL LYEVLEKWNF GPLLCDIWVS 240
  241 FDVLCCTASI LNLCAISVDR YLAITKPLEY GVKRTPRRMM LCVGIVWLAA ACISLPPLLI 300
  301 LGNEHEDEEG QPICTVCQNF AYQIYATLGS FYIPLSVMLF VYYQIFRAAR RIVLEEKRAQ 360
  361 THLQQALNGT GSPSAPQAPP LGHTELASSG NGQRHSSVGN TSLTYSTCGG LSSGGGALAG 420
  421 HGSGGGVSGS TGLLGSPHHK KLRFQLAKEK KASTTLGIIM SAFTVCWLPF FILALIRPFE 480
  481 TMHVPASLSS LFLWLGYANS LLNPIIYATL NRDFRKPFQE ILYFRCSSLN TMMRENYYQD 540
  541 QYGEPPSQRV MLGDERHGAR ESFL

Type	Start	End	Confidence
Cytoplasmic	1	28	0.71
Transmembrane Helix	29	50	0.69
Non-Cytoplasmic	51	162	0.72
Transmembrane Helix	163	188	0.89
Cytoplasmic	189	198	0.83
Transmembrane Helix	199	221	0.93
Non-Cytoplasmic	222	237	0.90
Transmembrane Helix	238	258	0.94
Cytoplasmic	259	278	0.89
Transmembrane Helix	279	301	0.92
Non-Cytoplasmic	302	323	0.92
Transmembrane Helix	324	346	0.86
Cytoplasmic	347	452	0.86
Transmembrane Helix	453	476	0.90
Non-Cytoplasmic	477	487	0.74
Transmembrane Helix	488	510	0.82
Cytoplasmic	511	564	0.92