YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RIN3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGITYLHISV ATTALSFVGL QVWTELSLDR LRADGIITKN ISLGNSENTL ELLLSSHTTI  60
   61 ALLASFVLNI YILLVLSLKT LFFGDLYAIE TRKLVERLAN YIIYKGTFLP FVVPRTVFQG 120
  121 VLWTIWLTVL CTLKMFQALA RDRLDRLNAS PSSTPWTYFR VYSALFMVLS TDLCWIKLSL 180
  181 MIYNTVGSSV YLLLLFEPCG IAFETLQALL IHGFQLLDMW INHLAVKNSD CQRSKFYDSM 240
  241 TAGSLLEWKG LLNRNLGFFL DMATLVMALG HYLHIWWLHG MAFHLVDAVL FLNIRALLSS 300
  301 ILKRIKGYIK LRVALGALHA ALLDATSEEL RDYDDECAIC REPMAKAKRL HCNHLFHLGC 360
  361 LRSWLDQGLN EVYSCPTCRK PLFVGRTESE ANPSRGEVSS DEHLARQFER QNNSVHALTT 420
  421 GMFPTETPNF TESDPWRNSE VDPSWLQTWS DQGVDVVGSS AGSRSVGLGQ VQLMMRHLAS 480
  481 VGEGSAQTTL DDASWGLWPM NPSQASTSST YVPPGAGGRT GGLHLRTVSR AANNMASILA 540
  541 MAETVREVLP HVPDEIIFQD LQRTNSVSVT VNNLLQM

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.52
Transmembrane Helix	5	24	0.57
Cytoplasmic	25	57	0.80
Transmembrane Helix	58	78	0.87
Non-Cytoplasmic	79	115	0.83
Transmembrane Helix	116	137	0.86
Cytoplasmic	138	157	0.86
Transmembrane Helix	158	179	0.86
Non-Cytoplasmic	180	189	0.72
Transmembrane Helix	190	211	0.80
Cytoplasmic	212	254	0.86
Transmembrane Helix	255	275	0.86
Non-Cytoplasmic	276	280	0.71
Transmembrane Helix	281	302	0.84
Cytoplasmic	303	577	0.81