YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	THAH_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFVWSAAVW VIAVAAVVIS KWLYRWSNPK CNGKLPPGSM GLPIIGETCD FFEPHGLYEI  60
   61 SPFVKKRMLK YGPLFRTNIF GSNTVVLTEP DIIFEVFRQE NKSFVFSYPE AFVKPFGKEN 120
  121 VFLKHGNIHK HVKQISLQHL GSEALKKKMI GEIDRVTYEH LRSKANQGSF DAKEAVESVI 180
  181 MAHLTPKIIS NLKPETQATL VDNIMALGSE WFQSPLKLTT LISIYKVFIA RRYALQVIKD 240
  241 VFTRRKASRE MCGDFLDTMV EEGEKEDVIF NEESAINLIF AILVVAKEST SSVTSLAIKF 300
  301 LAENHKALAE LKREHAAILQ NRNGKGAGVS WEEYRHQMTF TNMVINETLR MANMAPIMYR 360
  361 KAVNDVEIKG YTIPAGWIVA VIPPAVHFND AIYENPLEFN PWRWEGKELR SGSKTFMVFG 420
  421 GGVRQCVGAE FARLQISIFI HHLVTTYDFS LAQESEFIRA PLPYFPKGLP IKISQSL

Type	Start	End	Confidence
Signal Peptide	1	20	0.81
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	477	0.94