YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42568368
Protein type:	Globular with Signal Peptide
Type Confidence:	0.36
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKGLKRSCV MVVVAFLAKV DISVSVPFIM LHGIASQCSD DTNANFTQLL TNLSGSPGFC  60
   61 LEIGNGVINS MFLPLTQQAE IACENVKEMK ELSQGYNIVG RSQGNLVARG LIEFCDGGPP 120
  121 VFNYISLAGP HAGISSLPRG LCGLTSDPAC KKFNELIKGA LYSETIQDHL APSGYYKIPN 180
  181 DMKQYLERSK YLPKLNNEIP NQRNQTYKDR FTSLHNLVLV KFQDDEVITP NDSTWFGFYP 240
  241 DGEFETLLSA NQTKLYTEDW IGLKTLDDAG KVKFVSVPGG HVRMAEEDVV KYVVPYLQNQ 300
  301 QPAAQSFNRK TKEPLHP

Type	Start	End	Confidence
Signal Peptide	1	20	0.35
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	317	0.94