YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30681966, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSFLILQVS EVFQVVIAAV VSIVFLVLAG LTLAGSATAL TITTPLFIIF SPILVPATIA  60
   61 TAVITTGLTA GGALGTMAAA SLLSLRRRFG RRRFGGLRRF GGGRRFGGRF GKPGGGGLGG 120
  121 GGLPGGLGGL GGGGLPGGLG GLGGGENPLA KISKMFGPGA AGAASGDAPP AETAPAAGAA 180
  181 PAAGAEPAAP PTW

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.61
Transmembrane Helix	12	35	0.86
Cytoplasmic	36	39	0.50
Transmembrane Helix	40	64	0.67
Non-Cytoplasmic	65	66	0.45
Transmembrane Helix	67	85	0.90
Cytoplasmic	86	109	0.86
Transmembrane Helix	110	135	0.76
Non-Cytoplasmic	136	193	0.79