YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|1809329
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIWFSTAVLI GLYVFERFPT SMIGVGLFTN LVYFGLLQTF PFIMLTSPNF ILSCGLVVVN  60
   61 HYLAFQFFAE EYYPFSEVLA YFTFCLCAGS SYRHMRNMKG LRHQAVLAIG QELNRRALGD 120
  121 PSPGWMGQVR RRSSLLGSQL EATLYSDQEL SYIQQGEEAM QKALGILNNQ EGWKKESQQE 180
  181 NGDEVLSKVV PGVGKVFRLE VLLDQPMDRL YEELVDRMEA MGEWNPNVKE IKVLKKIGKD 240
  241 TVITHELAAA AAGNLVGPRD FVSVRCTKRR GSTCVLAGMA THFGEMPEQS GVIRAEHGPT 300
  301 CMVLHPLAGS PSKTKLTWLL SIDLKGWLPK TIINQVLSQT QIEFASHLRK RLESSPASEA 360
  361 QC

Type	Start	End	Confidence
Non-Cytoplasmic	1	17	0.69
Transmembrane Helix	18	37	0.88
Cytoplasmic	38	44	0.58
Transmembrane Helix	45	65	0.80
Non-Cytoplasmic	66	72	0.79
Transmembrane Helix	73	94	0.80
Cytoplasmic	95	362	0.87