YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30694648
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEQVQEPLS DQVFINFRGD ELREIFVNHL ELQLRNAGIN VFIDTKEQKG RRLQYLFTRI  60
   61 KKSKIALAIF SKRYCESKWC LDELVTMNEQ MKEKKLVVIP IFYNVRSDDV KRAANPDGEG 120
  121 NLDGEFSLPF KQLKQNHAGE PERVEGFSRS NSKYKHDTDF VLDIVKEVKK QLNIPTDNSW 180
  181 SAIGVAFLAI TINLIFSFFI APKYLPDQKF FQTPEWFIGT LAVVLASWFW YKNNQNKAPP 240
  241 PS

Type	Start	End	Confidence
Cytoplasmic	1	178	0.78
Transmembrane Helix	179	201	0.91
Non-Cytoplasmic	202	212	0.65
Transmembrane Helix	213	231	0.92
Cytoplasmic	232	242	0.73