YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: GSO2_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.74
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQQNSVLLAL FFLCFSSGLG SGQPGQRDDL QTLLELKNSF ITNPKEEDVL RDWNSGSPSY  60
   61 CNWTGVTCGG REIIGLNLSG LGLTGSISPS IGRFNNLIHI DLSSNRLVGP IPTTLSNLSS 120
  121 SLESLHLFSN LLSGDIPSQL GSLVNLKSLK LGDNELNGTI PETFGNLVNL QMLALASCRL 180
  181 TGLIPSRFGR LVQLQTLILQ DNELEGPIPA EIGNCTSLAL FAAAFNRLNG SLPAELNRLK 240
  241 NLQTLNLGDN SFSGEIPSQL GDLVSIQYLN LIGNQLQGLI PKRLTELANL QTLDLSSNNL 300
  301 TGVIHEEFWR MNQLEFLVLA KNRLSGSLPK TICSNNTSLK QLFLSETQLS GEIPAEISNC 360
  361 QSLKLLDLSN NTLTGQIPDS LFQLVELTNL YLNNNSLEGT LSSSISNLTN LQEFTLYHNN 420
  421 LEGKVPKEIG FLGKLEIMYL YENRFSGEMP VEIGNCTRLQ EIDWYGNRLS GEIPSSIGRL 480
  481 KDLTRLHLRE NELVGNIPAS LGNCHQMTVI DLADNQLSGS IPSSFGFLTA LELFMIYNNS 540
  541 LQGNLPDSLI NLKNLTRINF SSNKFNGSIS PLCGSSSYLS FDVTENGFEG DIPLELGKST 600
  601 NLDRLRLGKN QFTGRIPRTF GKISELSLLD ISRNSLSGII PVELGLCKKL THIDLNNNYL 660
  661 SGVIPTWLGK LPLLGELKLS SNKFVGSLPT EIFSLTNILT LFLDGNSLNG SIPQEIGNLQ 720
  721 ALNALNLEEN QLSGPLPSTI GKLSKLFELR LSRNALTGEI PVEIGQLQDL QSALDLSYNN 780
  781 FTGRIPSTIS TLPKLESLDL SHNQLVGEVP GQIGDMKSLG YLNLSYNNLE GKLKKQFSRW 840
  841 QADAFVGNAG LCGSPLSHCN RAGSKNQRSL SPKTVVIISA ISSLAAIALM VLVIILFFKQ 900
  901 NHDLFKKVRG GNSAFSSNSS SSQAPLFSNG GAKSDIKWDD IMEATHYLNE EFMIGSGGSG 960
  961 KVYKAELKNG ETIAVKKILW KDDLMSNKSF NREVKTLGTI RHRHLVKLMG YCSSKADGLN1020
 1021 LLIYEYMANG SVWDWLHANE NTKKKEVLGW ETRLKIALGL AQGVEYLHYD CVPPIVHRDI1080
 1081 KSSNVLLDSN IEAHLGDFGL AKILTGNYDT NTESNTMFAG SYGYIAPEYA YSLKATEKSD1140
 1141 VYSMGIVLME IVTGKMPTEA MFDEETDMVR WVETVLDTPP GSEAREKLID SELKSLLPCE1200
 1201 EEAAYQVLEI ALQCTKSYPQ ERPSSRQASE YLLNVFNNRA ASYREMQTDT DK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle