YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18422298, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.75
Topology Confidence:	0.30
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIVGLSKRF FSDRRSLHGI NNALLKTVFT GRKPILGFSG RSIHELRKTG NFVIPRVFSV  60
   61 SRNLTTKASS SSSKQPAFLR WYLRKLESHP FMTKSITTSV IYMAADLTSQ MITMEPTGSF 120
  121 DLIRTARMAS FGLIFLGPSQ HLWFSYLSKI LPKRDVLTTF KKIMMGQVLF GPVSNTVFYS 180
  181 YNAALQGENS EEIVARLKRD LLPTLKNGLM YWPVCDFVTF KYVPVHLQPL MNSSCAYIWT 240
  241 IYLTYMANQT KADS

Type	Start	End	Confidence
Cytoplasmic	1	89	0.69
Transmembrane Helix	90	108	0.51
Non-Cytoplasmic	109	125	0.72
Transmembrane Helix	126	144	0.67
Cytoplasmic	145	162	0.55
Transmembrane Helix	163	179	0.30
Non-Cytoplasmic	180	254	0.59