YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|126352558, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	25	0.63
Transmembrane Helix	26	49	0.85
Cytoplasmic	50	64	0.57
Transmembrane Helix	65	87	0.81
Non-Cytoplasmic	88	104	0.57
Transmembrane Helix	105	126	0.87
Cytoplasmic	127	140	0.83
Transmembrane Helix	141	160	0.84
Non-Cytoplasmic	161	176	0.61
Transmembrane Helix	177	200	0.84
Cytoplasmic	201	204	0.62
Transmembrane Helix	205	223	0.86
Non-Cytoplasmic	224	273	0.90
Transmembrane Helix	274	293	0.91
Cytoplasmic	294	311	0.82
Transmembrane Helix	312	334	0.81
Non-Cytoplasmic	335	382	0.92
Transmembrane Helix	383	405	0.89
Cytoplasmic	406	422	0.92
Transmembrane Helix	423	444	0.93
Non-Cytoplasmic	445	455	0.87
Transmembrane Helix	456	477	0.91
Cytoplasmic	478	483	0.92
Transmembrane Helix	484	506	0.87
Non-Cytoplasmic	507	525	0.92
Transmembrane Helix	526	548	0.92
Cytoplasmic	549	637	0.99
Transmembrane Helix	638	660	0.87
Non-Cytoplasmic	661	662	0.78

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSSTWSPGT ATTAAPLASY ERIRNAADIS VIVIYFVVVM AVGLWAMFST NRGTVGGFFL  60
   61 AGRNMVWWPI GASLFASNIG SGHFVGLAGS GAASGIAMGG FEWNALILVV VLGWVFVPIY 120
  121 IKAGVVTMPE YLKKRFGGQR IQVYLSLLSL LLYIFTKISA DIFSGAIFIN MALGLDLYLA 180
  181 IILLLAVTGI YTITGGLAAV IYTDTLQTAI MLVGSAILTG FAFNEVGGYE AFMEKYMKAI 240
  241 PTMISDGNIT IKEECYTPRA DSFHIFRDPL KGDLPWPGLI FGLFILTLWY WCTDQVIVQR 300
  301 CLSAKNMSHV KGGCIMCGYL KLLPMFLMVM TGMVSRILYT ERVACVLPSE CEKYCGIKVG 360
  361 CSNIAYPTLV IELMPDGLRG LMLSVMLASL MSSLTSIFNS ASTLFTMDIY TKIRKRASEK 420
  421 ELMLVGRLFI LVLIGVSIAW VPIVQSAQSG QLFDYIQSIT SYLGPPIAAV FLLAIFWKRT 480
  481 TESGAFWGLI LGFLVGLARM ITEFAYGTGS CTEPSNCPTI ICGVHYLYFA IILFAISVIT 540
  541 IVVVSLFTKP IPDVHLYRLC WSLRNSKEER IDLDAGEENI QDTLEESIEI EVPEEKKGCF 600
  601 RRAYDLFCGL DQQKGPKMTK EEEEAMKLKM TDTSEKPLWR TIMNINGIIL LTVAVFCHAY 660
  661 FA