YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|1766024
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	59	0.95
Transmembrane Helix	60	80	0.90
Non-Cytoplasmic	81	85	0.76
Transmembrane Helix	86	105	0.95
Cytoplasmic	106	112	0.80
Transmembrane Helix	113	131	0.93
Non-Cytoplasmic	132	138	0.77
Transmembrane Helix	139	159	0.94
Cytoplasmic	160	169	0.70
Transmembrane Helix	170	189	0.91
Non-Cytoplasmic	190	236	0.89
Transmembrane Helix	237	264	0.82
Cytoplasmic	265	276	0.79
Transmembrane Helix	277	299	0.87
Non-Cytoplasmic	300	304	0.63
Transmembrane Helix	305	325	0.72
Cytoplasmic	326	326	0.39
Transmembrane Helix	327	349	0.77
Non-Cytoplasmic	350	384	0.57

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDIPTMVKV DRGESQILSC RGRRWGLKVL GYVTGDMKEF ANWLKDEPVG LQFMDWILRG  60
   61 ISQVVFVSNP ISGILILAGL LVQNPWWALC GCVGTVVSTL TALLLSQDRS AIAAGLQGYN 120
  121 ATLVGILMAV FSDKGDYFWW LIFPVSAMSM TCPVFSSALS SLFSKWDLPV FTLPFNMALA 180
  181 LYLSATGHYN TFFPSKLFMP VSSVPNITWS ELSALELLKS LPVGVGQIYG CDNPWTGAIF 240
  241 LCAILLSSPL MCLHAAIGSL LGVIARLSLA APFKDIYSGL WGFNSSLACI AIGGMFMALT 300
  301 WQTHLLALAC ALFTAYFGAC MTHLIAAVHL PACTWSFCFA TLLFLLLTTE NPNIYRMPLS 360
  361 KVTYSEENRI FYLQNKKSAV DRPL