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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: PME28_ARATH
Protein type: Transmembrane
Type Confidence: 0.96
Topology Confidence: 0.90
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYGYDDEDA KRKKRYVIIS ISSVLLISMV VAVTIGVSVN KSDNAGDEEI TTSVKAIKDV  60
   61 CAPTDYKETC EDTLRKDAKD TSDPLELVKT AFNATMKQIS DVAKKSQTMI ELQKDPRAKM 120
  121 ALDQCKELMD YAIGELSKSF EELGKFEFHK VDEALVKLRI WLSATISHEQ TCLDGFQGTQ 180
  181 GNAGETIKKA LKTAVQLTHN GLAMVTEMSN YLGQMQIPEM NSRRLLSQEF PSWMDARARR 240
  241 LLNAPMSEVK PDIVVAQDGS GQYKTINEAL NFVPKKKNTT FVVHIKEGIY KEYVQVNRSM 300
  301 THLVFIGDGP DKTVISGSKS YKDGITTYKT ATVAIVGDHF IAKNIAFENT AGAIKHQAVA 360
  361 IRVLADESIF YNCKFDGYQD TLYAHSHRQF YRDCTISGTI DFLFGDAAAV FQNCTLLVRK 420
  421 PLLNQACPIT AHGRKDPRES TGFVLQGCTI VGEPDYLAVK EQSKTYLGRP WKEYSRTIIM 480
  481 NTFIPDFVPP EGWQPWLGEF GLNTLFYSEV QNTGPGAAIT KRVTWPGIKK LSDEEILKFT 540
  541 PAQYIQGDAW IPGKGVPYIL GLFSGNGSTN STVTGSSLSS NTTESSDSPS TVVTPSTSPP 600
  601 AGHLGSPSDT PSSVVSPSTS LPAGQLGAPP ATPSMVVSPS TSPPAGHLGS PSDTPSSLVS 660
  661 PSTSPPAGHL GSPSDTPSSV VTPSASPSTS PSASPSVSPS AFPSASPSAS PSASPSVSPS 720
  721 ASPSASPQSS IG

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle