YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	EDL17_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	26	0.98
Transmembrane Helix	27	49	0.90
Non-Cytoplasmic	50	69	0.85
Transmembrane Helix	70	91	0.90
Cytoplasmic	92	100	0.72
Transmembrane Helix	101	118	0.86
Non-Cytoplasmic	119	125	0.61
Transmembrane Helix	126	147	0.81
Cytoplasmic	148	157	0.65
Transmembrane Helix	158	176	0.74
Non-Cytoplasmic	177	183	0.61
Transmembrane Helix	184	203	0.93
Cytoplasmic	204	264	0.96
Transmembrane Helix	265	288	0.87
Non-Cytoplasmic	289	297	0.72
Transmembrane Helix	298	318	0.90
Cytoplasmic	319	329	0.78
Transmembrane Helix	330	351	0.93
Non-Cytoplasmic	352	362	0.82
Transmembrane Helix	363	387	0.88
Cytoplasmic	388	397	0.82
Transmembrane Helix	398	419	0.91
Non-Cytoplasmic	420	428	0.77
Transmembrane Helix	429	449	0.94
Cytoplasmic	450	474	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVMEEGRSIE EGLLQLKNKN DDSECRITAC VILSTFVAVC GSFSFGVATG YTSGAETGVM  60
   61 KDLDLSIAQF SAFGSFATLG AAIGALFCGN LAMVIGRRGT MWVSDFLCIT GWLSIAFAKE 120
  121 VVLLNFGRII SGIGFGLTSY VVPVYIAEIT PKHVRGTFTF SNQLLQNAGL AMIYFCGNFI 180
  181 TWRTLALLGA LPCFIQVIGL FFVPESPRWL AKVGSDKELE NSLFRLRGRD ADISREASEI 240
  241 QVMTKMVEND SKSSFSDLFQ RKYRYTLVVG IGLMLIQQFS GSAAVISYAS TIFRKAGFSV 300
  301 AIGTTMLGIF VIPKAMIGLI LVDKWGRRPL LMTSAFGMSM TCMLLGVAFT LQKMQLLSEL 360
  361 TPILSFICVM MYIATYAIGL GGLPWVIMSE IFPINIKVTA GSIVTLVSFS SSSIVTYAFN 420
  421 FLFEWSTQGT FFIFAGIGGA ALLFIWLLVP ETKGLSLEEI QVSLIHQPDE RNQT