YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NAT9_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	59	0.85
Transmembrane Helix	60	81	0.90
Cytoplasmic	82	90	0.73
Transmembrane Helix	91	110	0.86
Non-Cytoplasmic	111	116	0.70
Transmembrane Helix	117	139	0.83
Cytoplasmic	140	152	0.92
Transmembrane Helix	153	173	0.93
Non-Cytoplasmic	174	182	0.67
Transmembrane Helix	183	201	0.95
Cytoplasmic	202	218	0.86
Transmembrane Helix	219	237	0.92
Non-Cytoplasmic	238	273	0.93
Transmembrane Helix	274	294	0.93
Cytoplasmic	295	313	0.91
Transmembrane Helix	314	334	0.93
Non-Cytoplasmic	335	341	0.73
Transmembrane Helix	342	362	0.93
Cytoplasmic	363	369	0.74
Transmembrane Helix	370	390	0.72
Non-Cytoplasmic	391	419	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANGAGNGGG GAGGNGGGGN NGAGNRAEEL QPHPVKEQLP GIQYCVNSPP PWLEAVVLGF  60
   61 QHYLLSLGIT VLIPSLLVPL MGGGDAEKVK VIQTLLFVSG LTTLFQSFFG TRLPVIASAS 120
  121 YAYIIPITSI IYSTRFTYYT DPFERFVRTM RSIQGALIIT GCFQVLVCFL GVWRNIVRFL 180
  181 SPLSIAPLVT FTGLGLYHIG FPLVKKGPMI WDGNRCDRYG MMLCIPVVWL FAQLLTSSGV 240
  241 YDHKPQTTQT SCRTDRTGLI TNTPCPTFDI TDSFAMMAAS FVTLFESTGL FYASARYGKN 300
  301 VGLLAMTKVG SRRVIQISAA FMLFFSIFGK FGAFFASIPL PIMASLYCIV LCFVSSAGLS 360
  361 FLQFCNLNSF NTKFILGFSF FMAISIPQYF REYYNGVGRC DKSDIHVTYN GCGNNCDSA