YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|14530172
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAEGRGRAE LALPTPREPA SASEIELAEV SLQESVLLEK PAPTAPRQTW LTVLKRELEF  60
   61 LGVTQILIGL ICLCFGIVVS SKINDSEFTE YFFSSFKAGY PFWGALFFAI SGILSIMSER 120
  121 KPSAYLIRGC LGANAVSSVA AGTGVGVLIS NLKQSSTYVY RCKEVYENDY CSLACFSTEV 180
  181 VAIILLLTIL GFGSAVSLIA YGIGEIIEGN QIPEDRLYEE VNIYSPIYSE LEEREETASP 240
  241 ADS

Type	Start	End	Confidence
Cytoplasmic	1	59	0.99
Transmembrane Helix	60	80	0.94
Non-Cytoplasmic	81	98	0.87
Transmembrane Helix	99	117	0.95
Cytoplasmic	118	124	0.89
Transmembrane Helix	125	149	0.84
Non-Cytoplasmic	150	179	0.92
Transmembrane Helix	180	203	0.87
Cytoplasmic	204	243	0.94