YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149725171, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPENRARAE LILPNPQGPS RVSEIELAEV SLHDTTLLRK GAQIQPHPTW LTFLRKELEF  60
   61 LGVTQILIGL TCLWFGTFVF SMLTKSDFEE NIFSSFEAGY PFWGAIFFFI SGFLSIMSEE 120
  121 KREIYLLQGS LGANTVSSMA AGTGIIILLI NLKTSMAFIY NCQDTYEEDF CLIVSFSTEI 180
  181 VAVTLFITVL GFCSAVSLTI YGVGEIFERS KIPEDRLYEE LNIYSPIYSE LEERGDIFSQ 240
  241

Type	Start	End	Confidence
Cytoplasmic	1	59	0.99
Transmembrane Helix	60	82	0.90
Non-Cytoplasmic	83	98	0.88
Transmembrane Helix	99	117	0.95
Cytoplasmic	118	129	0.77
Transmembrane Helix	130	150	0.93
Non-Cytoplasmic	151	179	0.94
Transmembrane Helix	180	203	0.90
Cytoplasmic	204	240	0.98