YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MRS2B_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALTPIPSTF TSLFNFSDHS PYPSPSLHYL LPGSSPSFSL QLSALSRTPI YFEALKVLSR  60
   61 SKCFAKSPTT AEDFVGDYES LNVSDDDDGS DSNSSDGDNG GGRDDSKKID SSSSSSSSDS 120
  121 TSLGIREPVY EVVEVKATGA ISTRKINRRQ LLKSSGLRPR DIRSVDPSLF MTNSVPSLLV 180
  181 REHAILLNLG SLRAIAMRDR VLIFDYNRRG GRAFVDTLMP RLNPRSMNGG PSMPFELEAV 240
  241 ESALISRIQR LEQRLMDIEP RVQALLEVLP NRLTADILEE LRISKQRLVE LGSRAGALRQ 300
  301 MLLDLLEDPH EIRRICIMGR NCTLRRGDDD LECTLPSDKL IAEEEEEEIE MLLENYLQRC 360
  361 ESCHGQAERL LDSAKEMEDS IAVNLSSRRL EVSRFELLLQ VGTFCVAVGA LIAGIFGMNL 420
  421 RSYLEEQASA FWLTTGGIII GAAVAFFLMY SYLSRRKIF

Type	Start	End	Confidence
Cytoplasmic	1	396	0.75
Transmembrane Helix	397	418	0.94
Non-Cytoplasmic	419	429	0.68
Transmembrane Helix	430	453	0.90
Cytoplasmic	454	459	0.76