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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: HMA8_ARATH
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.84
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASNLLRFPL PPPSSLHIRP SKFLVNRCFP RLRRSRIRRH CSRPFFLVSN SVEISTQSFE  60
   61 STESSIESVK SITSDTPILL DVSGMMCGGC VARVKSVLMS DDRVASAVVN MLTETAAVKF 120
  121 KPEVEVTADT AESLAKRLTE SGFEAKRRVS GMGVAENVKK WKEMVSKKED LLVKSRNRVA 180
  181 FAWTLVALCC GSHTSHILHS LGIHIAHGGI WDLLHNSYVK GGLAVGALLG PGRELLFDGI 240
  241 KAFGKRSPNM NSLVGLGSMA AFSISLISLV NPELEWDASF FDEPVMLLGF VLLGRSLEER 300
  301 AKLQASTDMN ELLSLISTQS RLVITSSDNN TPVDSVLSSD SICINVSVDD IRVGDSLLVL 360
  361 PGETFPVDGS VLAGRSVVDE SMLTGESLPV FKEEGCSVSA GTINWDGPLR IKASSTGSNS 420
  421 TISKIVRMVE DAQGNAAPVQ RLADAIAGPF VYTIMSLSAM TFAFWYYVGS HIFPDVLLND 480
  481 IAGPDGDALA LSLKLAVDVL VVSCPCALGL ATPTAILIGT SLGAKRGYLI RGGDVLERLA 540
  541 SIDCVALDKT GTLTEGRPVV SGVASLGYEE QEVLKMAAAV EKTATHPIAK AIVNEAESLN 600
  601 LKTPETRGQL TEPGFGTLAE IDGRFVAVGS LEWVSDRFLK KNDSSDMVKL ESLLDHKLSN 660
  661 TSSTSRYSKT VVYVGREGEG IIGAIAISDC LRQDAEFTVA RLQEKGIKTV LLSGDREGAV 720
  721 ATVAKNVGIK SESTNYSLSP EKKFEFISNL QSSGHRVAMV GDGINDAPSL AQADVGIALK 780
  781 IEAQENAASN AASVILVRNK LSHVVDALSL AQATMSKVYQ NLAWAIAYNV ISIPIAAGVL 840
  841 LPQYDFAMTP SLSGGLMALS SIFVVSNSLL LQLHKSETSK NSL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle