YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PTR51_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	61	0.95
Transmembrane Helix	62	85	0.84
Non-Cytoplasmic	86	108	0.76
Transmembrane Helix	109	128	0.85
Cytoplasmic	129	135	0.69
Transmembrane Helix	136	157	0.93
Non-Cytoplasmic	158	174	0.85
Transmembrane Helix	175	194	0.88
Cytoplasmic	195	214	0.83
Transmembrane Helix	215	236	0.89
Non-Cytoplasmic	237	243	0.77
Transmembrane Helix	244	264	0.92
Cytoplasmic	265	364	0.97
Transmembrane Helix	365	387	0.84
Non-Cytoplasmic	388	401	0.86
Transmembrane Helix	402	426	0.79
Cytoplasmic	427	434	0.82
Transmembrane Helix	435	455	0.91
Non-Cytoplasmic	456	477	0.78
Transmembrane Helix	478	496	0.55
Cytoplasmic	497	513	0.41
Transmembrane Helix	514	537	0.81
Non-Cytoplasmic	538	557	0.52
Transmembrane Helix	558	578	0.92
Cytoplasmic	579	609	0.52

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAMDPRNNG NVAPLNERER AENLEVREVV EVQDDQSVVS LMSNDSDLQK KMMKKEEKKN  60
   61 GGWTNAIILL VNQGLATLAF FGVGVNLVLF LTRVMGQGNA EAANNVSKWT GTVYMFSLVG 120
  121 AFLSDSYWGR YLTCTIFQVI FVIGVGLLSF VSWFFLIKPR GCGDGDLECN PPSSLGVAIF 180
  181 YLSVYLVAFG YGGHQPTLAT FGADQLDDDK NSKAAFFSYF YFALNVGALF SNTILVYFED 240
  241 KGLWTEGFLV SLGSAIVALV AFLAPTRQYR YVKPCGNPLP RVAQVFVATA RKWSVVRPGD 300
  301 PHELYELEGP ESAIKGSRKI FHSTKFLFLD RAAVITENDR NGTRSNAWRL CSVTQVEEAK 360
  361 CVMKLLPIWL CTIIYSVIFT QMASLFVEQG DVMNAYVGKF HIPAASMSVF DIFSVFVSTG 420
  421 IYRHIIFPYV RPTELMRMGI GLIIGIMAMV AAGLTEIQRL KRVVPGQKES ELTILWQIPQ 480
  481 YVLVGASEVF MYVGQLEFFN GQAPDGLKNL GSSLCMASMA LGNYVSSLMV NIVMAITKRG 540
  541 ENSPGWIPEN LNEGHMDRFY FLIAALAAID FVVYLIFAKW YQPISHDEDS IKGGSGGSLK 600
  601 KTVSELEQV