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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: GNL2_ARATH
Protein type: Transmembrane
Type Confidence: 0.81
Topology Confidence: 0.83
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRIAVRAKR KELGISCMLN TEVGAVLAVI RRPLSESYLS PQETDHCDSS VQQSLKSLRA  60
   61 LIFNPQQDWR TIDPSVYLSP FLEVIQSDEI PASATAVALS SILKILKIEI FDEKTPGAKD 120
  121 AMNSIVSGIT SCRLEKTDLV SEDAVMMRIL QVLTGIMKHP SSELLEDQAV CTIVNTCFQV 180
  181 VQQSTGRGDL LQRNGRYTMH ELIQIIFSRL PDFEVRGDEG GEDSESDTDE IDMSGGYGIR 240
  241 CCIDIFHFLC SLLNVVEVVE NLEGTNVHTA DEDVQIFALV LINSAIELSG DAIGQHPKLL 300
  301 RMVQDDLFHH LIHYGASSSP LVLSMICSCI LNIYHFLRKF MRLQLEAFFS FVLLRVTAFT 360
  361 GFLPLQEVAL EGLINFCRQP AFIVEAYVNY DCDPMCRNIF EETGKVLCRH TFPTSGPLTS 420
  421 IQIQAFEGLV ILIHNIADNM DREEDEGNEE DDNNSNVIKP SPVEIHEYIP FWIDKPKEDF 480
  481 ETWVDHIRVR KAQKRKLAIA ANHFNRDEKK GLEYLKYNYL VSDPLDPMAL ASFFRFTPGL 540
  541 DKTMIGDYLG DPDELHLSVL RSFTHTFEFT GMNLDTALRT FLESFRLPGE SQKIERMIEA 600
  601 FSERFYDQQS SDIFASKDTV HILCYSLIML NTDQHNPQVR RKMTEDEFIR NNRAINAGND 660
  661 LPKEYLSELF QSIATNAFAL STHSGPVEMN PNRWIELMNR TKTTQPFSLC QFDRRIGRDM 720
  721 FATIAGPSIA AVSAFFEHSD DDEVLHECVD AMISIARVAQ YGLEDILDEL IASFCKFTTL 780
  781 LNPYTTPEET LFAFSHDMKP RMATLAVFTL ANTFGDSIRG GWRNIVDCLL KLRKLQLLPQ 840
  841 SVIEFEINEE NGGSESDMNN VSSQDTKFNR RQGSSLMGRF SHFLALDNVE ESVALGMSEF 900
  901 EQNLKVIKQC RIGQIFSKSS VLPDVAVLNL GRSLIYAAAG KGQKFSTAIE EEETVKFCWD 960
  961 LIITIALSNV HRFNMFWPSY HEYLLNVANF PLFSPIPFVE KGLPGLFRVC IKILASNLQD1020
 1021 HLPEELIFRS LTIMWKIDKE IIETCYDTIT EFVSKIIIDY SANLHTNIGW KSVLQLLSLC1080
 1081 GRHPETKEQA VDALIGLMSF NASHLSQSSY AYCIDCAFSF VALRNSSVEK NLKILDLMAD1140
 1141 SVTMLVKWYK TASTDTANSY SPASNTSSSS SMEENNLRGV NFVHHLFLKL SEAFRKTTLA1200
 1201 RREEIRNRAV TSLEKSFTMG HEDLGFTPSG CIYCIDHVIF PTIDDLHEKL LDYSRRENAE1260
 1261 REMRSMEGTL KIAMKVLMNV FLVYLEQIVE SAEFRTFWLG VLRRMDTCMK ADLGEYGDNK1320
 1321 LQEVVPELLT TMIGTMKEKE ILVQKEDDDL WEITYIQIQW IAPALKDELF PDEEI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle