YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42567960, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	109	0.97
Transmembrane Helix	110	132	0.90
Non-Cytoplasmic	133	137	0.87
Transmembrane Helix	138	160	0.93
Cytoplasmic	161	184	0.86
Transmembrane Helix	185	205	0.84
Non-Cytoplasmic	206	221	0.72
Transmembrane Helix	222	242	0.92
Cytoplasmic	243	249	0.76
Transmembrane Helix	250	271	0.90
Non-Cytoplasmic	272	284	0.83
Transmembrane Helix	285	307	0.82
Cytoplasmic	308	318	0.82
Transmembrane Helix	319	339	0.93
Non-Cytoplasmic	340	373	0.91
Transmembrane Helix	374	395	0.88
Cytoplasmic	396	408	0.85
Transmembrane Helix	409	429	0.87
Non-Cytoplasmic	430	434	0.81
Transmembrane Helix	435	455	0.91
Cytoplasmic	456	471	0.85
Transmembrane Helix	472	492	0.78
Non-Cytoplasmic	493	505	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVSLSYTCL LRLPTFSVPT KPISFNGPLP FYLPRSHISS SCFGFKSNPF IRTQTPRFFK  60
   61 CLPQRVSDER RETQVTTEEE EEDEEEKIVV FERLFSNLNQ STLKRESGSL SSAIFLVAGT 120
  121 TVGAGILAIP AVTQESGFLA SAVACILCWA FMVVTGLLVA EVNVNTMSEL GSGGVSLVSM 180
  181 AKRTLGSVGV QVVSWSYLLI HYTLLVAYIA RSSGILTNFL GIPIWESATL FSLIFGGLCF 240
  241 FGSQRFIGAA NGVLVFGVIA SFAALVAVAS GDLHWEALLK ANFEAVPMSV PIIALSFVYQ 300
  301 NVVPVLCTDL EGDLPRVRTA IVLGTAIPLG LFLVWDAVIL GSFPVDTGVA VEKMVDPLQQ 360
  361 LRSSSVTVGP FVEAFSLFAI ATSYIGFVLG LSDFFSDLLK LPSGQNKPLL YLLTLVPPLV 420
  421 LSLLDPEIFF KALDFAGTYG VLVLFGILPA AMSWSDRYIV SSSTVTRLPQ LVPGGKLTLS 480
  481 LVMGAAGYVI ISEVIENLSK YLNVS