YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AB23G_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASCFHPSAM ATSHREEDSI ILFSASNSPD EFSSASSSFS SSPLPTPNRY SLTVTNLSYT  60
   61 INHTPILNSV SLAAESSKIL AVVGPSGTGK STLLKIISGR VNHKALDPSS AVLMNNRKIT 120
  121 DYNQLRRLCG FVPQDDDLLP LLTVKETLMY SAKFSLRDST AKEREERVES LLSDLGLVLV 180
  181 QDSFVGEGDE EDRGVSGGER KRVSIAVEMI RDPPILLLDE PTSGLDSRNS LQVVELLATM 240
  241 AKSKQRTVLF SIHQPSYRIL DYISDYLILS RGSVIHLGSL EHLEDSIAKL GFQIPEQLNP 300
  301 IEFAMEIVES LRTFKPNSVA VVESSSMWPE NNENDGIISK KEAFRVLDVT EISYLCSRFC 360
  361 KIIYRTKQLF LARTMQAVVA GLGLGSVYTR LKRDEEGVAE RLGLFAFSLS FLLSSTVEAL 420
  421 PIYLRERRVL MKESSRGSYR ISSYMIANTI AFVPFLFVVS LLFSIPVYWI VGLNPSIQAF 480
  481 SFFVLCVWLI ILMASSLVLF LSAVSPDFIS GNSLICTVLG AFFLFSGYFI PKEKIPKPWM 540
  541 FMYYVSLYRY PLESMVVNEY WSMREECFSS GNMGCLMTGE DVLKERGLDK DTRWINVGIM 600
  601 LAFFVFYRIL CWGILLRKAS KSTH

Type	Start	End	Confidence
Cytoplasmic	1	368	0.54
Transmembrane Helix	369	389	0.60
Non-Cytoplasmic	390	401	0.79
Transmembrane Helix	402	424	0.90
Cytoplasmic	425	443	0.81
Transmembrane Helix	444	469	0.86
Non-Cytoplasmic	470	478	0.72
Transmembrane Helix	479	501	0.93
Cytoplasmic	502	508	0.72
Transmembrane Helix	509	531	0.91
Non-Cytoplasmic	532	593	0.83
Transmembrane Helix	594	616	0.87
Cytoplasmic	617	624	0.81