YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|11322249
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AIAAVITFLI LFTIFGNALV ILAVLTSRSL RAPQNLFLVS LAAADILVAT LIIPFSLANE  60
   61 LLGYWYFRRT WCEVYLALDV LFCTSSIVHL CAISLDRYWA VSRALEYNSK RTPRRIKCII 120
  121 LTVWLIAAVI SLPPLIYKGD QGPQPRGRPQ CKLNQEAWYI LASSIGSFFA PCLIMILVYL 180
  181 RIYLIAKRSH RRGPRAKGRP REGESKQPRP VPTGTSTKMP TLASLAASGE ANGHSKPTGA 240
  241 KEEGETPEDP ATPALPPSWS ALPNSGQGRK EGVCGASPEE EAEEEEEECE PRALPASPAS 300
  301 ACSPPLQQPQ GSRVLATLRG QVLLGRGVGT SSGQWWRRRA QLTREKRFTF VLAVVIGVFV 360
  361 LCWFPFFFSY SLGAICPQHC KVPHGLF

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.88
Transmembrane Helix	6	26	0.95
Cytoplasmic	27	35	0.86
Transmembrane Helix	36	58	0.92
Non-Cytoplasmic	59	74	0.93
Transmembrane Helix	75	95	0.93
Cytoplasmic	96	115	0.88
Transmembrane Helix	116	137	0.91
Non-Cytoplasmic	138	161	0.92
Transmembrane Helix	162	185	0.88
Cytoplasmic	186	347	0.99
Transmembrane Helix	348	367	0.98
Non-Cytoplasmic	368	387	0.93