YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CSLAF_ARATH
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLLLKPLLS LHDLSLNLLS VMFHGETLKA SVDGVGINMS TMWRETRNVF IVPLFKCIVV  60
   61 MCLIISLLVF VESVYMNLVV LYVKLFNRKP EKVYKWEAMQ EDMELGHQNY PMVLVQIPMY 120
  121 NEREVFELSI GAACRLTWPS DRLIVQVLDD STDPAIMELV SMECTKWASK DININYERRE 180
  181 NRNGYKAGAL KHGMRHSYVK QCQYLAIFDA DFQPEPDYLQ RAIPFLIHNP EVALVQARWR 240
  241 FVNANTCLMT RMQEMSLNYH FMAEQQSGST RHAFFGFNGT AGVWRMVAME EAGGWKDRTT 300
  301 VEDMDLAVRV GLLGWKFIFV NDLEVKSELP SQFKAFRFQQ HRWSCGPANL IRKMTMEIIH 360
  361 NKRVKIWKKF YVIYSFFFLR KIVVHFFTYF FYCVILPTSV FLPEVNIPNW STIYVPSVIT 420
  421 LLSAIATPRS FYLVIFWVLF ENVMAMHRTK GTLIGLFEGG RVNEWVVTEK LGDTLNTKLL 480
  481 PQNGRLPKRV NLKEMMMGIY ILCCACYDFA FGNAFLYLYL FMQATAFLIS GVGFVGT

Type	Start	End	Confidence
Cytoplasmic	1	13	0.64
Transmembrane Helix	14	28	0.43
Non-Cytoplasmic	29	48	0.57
Transmembrane Helix	49	71	0.84
Cytoplasmic	72	376	0.73
Transmembrane Helix	377	401	0.75
Non-Cytoplasmic	402	417	0.80
Transmembrane Helix	418	440	0.90
Cytoplasmic	441	495	0.96
Transmembrane Helix	496	521	0.83
Non-Cytoplasmic	522	537	0.57