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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|1526615|emb|C...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.61
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEGGEGGED EIQFLRTEDE VVLQCIANIH KEQRKFCLAA EGLGNRLCFL EPTSEAKYVP  60
   61 PDLCVCNFVL EQSLSVRALQ EMLANTGENG GEGAAQGGGH RTLLYGHAIL LRHSFSGMYL 120
  121 TCLTTSRSQT DKLAFDVGLR ENATGEACWW TIHPASKQRS EGEKVRIGDD LILVSVSSER 180
  181 YLHLSVSNGN VQVDASFMQT LWNVHPTCSG SSIEEGYLLG GHVVRLFHGH DECLTIPSTD 240
  241 QNDAQHRRIF YEAGGAGTRA RSLWRVDPLR ISWSGSNIRW GQAFRLRHIT TGHYLALTED 300
  301 QGLLLQDRAK SDTKSTAFSF RASKEIKEKL DSSHKRDIEG MGVPEIKYGD SVCFVQHIAS 360
  361 GLWVTYKAQD AKTSRLGPLK RKVILHQEGH MDDGLTLQRC QREESQAARI IRNTTALFSQ 420
  421 FVSGNNRAAA PVTLPIQEVL QTLQDLIAYF QPPEEEMQHE DKQNKLRSLK NRQNLFKEEG 480
  481 MLALVLNCID RLNIYNSVAH FAGIAREESG MAWKEILNLL YKLLAALIRG NRNNCAQFSN 540
  541 NLDWLISKLD RLESSSGILE VLHCILIESP EALNLIAEGH IKSIISLLDK HGRNHKVLDV 600
  601 LCSLCLCNGV AVRANQNLIC DNLLPRRNLL LQTRLINDVT SIRPNIFLGV AEGSAQYKKW 660
  661 YFELIIDQVD PFLTAEPTHL RVGWASSSGY APYPGGGEGW GGNGVGDDLY SYGFDGLHLW 720
  721 SGRIPRAVAS INLHLLRSDD VVSCCLDLGV PSISFRINGQ PVQGMFENFN TDGLFFPVVS 780
  781 FSAGVKVRFL TGGRHGEFKF LPPSGYAPCY EALLPKEKMR LEPVKEYKRD AEGIRDLLGT 840
  841 TQSLSQASFI PCPIDTSQVV LPPHLEKIRD RLAENIHELW GMNKIELGWT FGKIRDDNKR 900
  901 QHPCLVEFSK LPETEKNYNL QMSTETLKTL LALGCHIAHV NPAAEEDLKK VKLPKNYMMS 960
  961 NGYKPAPLDL SDVKLLPPQE VLVDKLAENA HNVWAKDRIK QGWTYGIQQD LKNKRNPRLV1020
 1021 PYALLDERTK KSNRDSLREA VRTFVGYGYN IEPSDQELAD PAVEKVSIDK IRFFRVEWSY1080
 1081 AVRSGKWYFE FEVVTGGDMR VGWARPGCRP DIELGADDQA FVFEGSRGQR WHQGSGYFGR1140
 1141 TWQPGDVVGC MINLDDASMI FTLNGELLIT NKGSELAFAD YEIENGFVPI CSLGLSQIGR1200
 1201 MNLGMDASTF KFYTMCGLQE GFEPFAVNMN RDVAMWFSKR LPTFVNVPKD HPHIEVVRID1260
 1261 GTMDSPPCLK VTHKTFGTQN SNASMIYCRL SMPVECHSSF SHSPCLDSEA FQKRKQMQEI1320
 1321 LSHTTTQCYY AIRIFAGQDP SCVWVGWVTP DYHLYSEKFD LNKNCTVTVT LGDERGRVHE1380
 1381 SVKRSNCYMV WGGDIVATSQ RSSRSNVDLE IGCLVDLAMG MLSFSANGRE LGTCYQVEPN1440
 1441 TKVFPAVFLQ PTSTALFQFE LGKLKNAMPL SAAIFKSEEK NPVPQCPPRL DVQTIQPVLW1500
 1501 SRMPSSFLKV ETEGVSERHG WAVQCLEPLQ MMALHIPEEN RCVDILELCE QEDLMQFHYH1560
 1561 TLRLYSAVCA LGNSRVAYAL CGHVDLSQLF YAIDNKYLPG LLRSGFYDLL ISIHLANAKE1620
 1621 RKLMMKNEYI IPITSATRKI RLYPDESKRH GLPGVGLRTC LKPGFRFSTP CFVVTGEEHQ1680
 1681 KQSPEIPLEI LKTKALSMLT EAVQHSGAHI RDPVGGSVEF QFVPVLKLIG TLLVMGVFDD1740
 1741 DDIRQILLLI DPSVFGEHSV ETEDGAEKEE VTQVEEKAVE AGEKAGKEAP VKGLLQTRLP1800
 1801 ESVKLQMCEL LSYLCDCELQ HRVEAIVAFG DIYVSKLQAN QKSRYNELMQ ALNMSAALTA1860
 1861 RKTREFRSPP QEQINMLLNF QLGENCPCPE EIREELYDFH EDLLIHCGVP LEEEEEEEED1920
 1921 TSWAGKLRAL VYKIKGPPKP EKEQPTEEEE RCPTTLKELI SQTMIRWAQE DQIQDAELVR1980
 1981 MMFSLLQRQY DSIGELLQAL RKTYTISQAS VSDTINLLAA LGQIRCLLSV RMGKEEELLM2040
 2041 INGLGDIMNN KVFYQHPNLM RVLGMHETVM EVMVDVLGAE KSQIAFPKMV ASCCRFLCYF2100
 2101 CRISRQNQKA MFEHLSYLLE NSSVGLASPS MRGSTPLDVA ASSVMDNNEL ALGLEEPDLE2160
 2161 KVVTYLAGCG LQSCPMLLAK GYPDVGWNPI EGERYLSFLR FAVFVNSESV EENASVVVKL2220
 2221 LIRRPECFGP ALRGEGGNGL LAAMQGAIKI SENPALDLPS QGYKREVMED GEDEEIVHMG2280
 2281 NAIMSFYSAL IDLLGRCAPE MHLIQTGKGE AIRIRSILRS LVPTEDLVGI ISIPLKLPSL2340
 2341 NKDGSISEPD MAANFCPDHK APMVLFLDRV YGIKDQTFLL HLLEVGFLPD LRASASLDTV2400
 2401 SLSTTEAALA LNRYLCSAVL PLLTRCAPLF AGTEHYTSLI DSTLQTIYRL SKGRSLTKAQ2460
 2461 RDTIEECLLA ICNHLRPSML QQLLRRLVFD VPQLNEYCKM PLKLLTNHYE QCWKYYCLPS2520
 2521 GWGSYGLAVE EELHLTEKLF WGIFDSLSHK KYDPDLFRMA LPCLSAIAGA LPPDYLDTRI2580
 2581 SATLEKQISV DADGNFDPKP INTMNFSLPE KWEYIVTKYA EHSHDKWACD KSQNGWKYGI2640
 2641 SLDENVKTHP LIRPFKTLTE KEKEIYRWPA RESLKTMLAV GWSVERTKEG EALVQQRENE2700
 2701 KLRSVSQASQ GNSYSPAPLD LSNVVLSREL QGMVEVVAEN YHNIWAKKKK LELESKGGGS2760
 2761 HPLLVPYDTL TAKEKFRDRE KAQDLFKFLQ VNGIVVSRGV KDMELDASSM EKRFAYKFLK2820
 2821 KILKYVDSAQ EFIAHLEAIV SSGKTEKSPH DQEIKFFAKV LLPLVDQYFT NHHLYFLSSP2880
 2881 LKPLSSSGYA SHKEKEMVAS LFCKLAALVR HRISLFGSDS TTMVSCLHIL AQTLDTRTVM2940
 2941 KSGSELVKAG LRAFFENAAE DLEKTSENLK LGKFTHSRTQ IKGVSQNINY TTVALLPILT3000
 3001 SIFEHVAQHQ FGVDLLLGDV QISCYHILCS LYSLGTGKNI YVERQRPALG ECLASLAAAI3060
 3061 PVAFLEPTLN RYNPLSVFNT KTPRERSILG MPDTVEEMCP DIPQLEGLMK EISDLAESGA3120
 3121 RYTEMPHVIE VILPMLCNYL SYWWERGPEH LPPSTGPWCT KVTSEHLSVI LGNILKIINN3180
 3181 NLGIDEASWM KRIAVYAQPI ISKARPDLLK SHFIPTLEKL KKKAVKTVQE EEQLKADTKG3240
 3241 DTQEAELLIL DEFAVLCRDL YAFYPMLIRY VDNNRSNWLK SPSADSDQLF RMVAEVFILW3300
 3301 CKSHNFKREE QNFVIQNEIN NLAFLTGDSK SKMSKSGGQD QERKKTKRRG DLYSIQTSLI3360
 3361 VAALKKMLPI GLNMCTPGDQ ELISLAKSRY SYRDTDEEVK EHLRNNLHLQ EKSDDPAVKW3420
 3421 QLNLYKDVLK SEEPFNAEKT IERVQRISAA VFHLEQVEQP LRSKKAVWHK LLSKQRKRAV3480
 3481 VACFRMAPLY NLPRHKINNF FLSTFQRVWL EKVNEKTQYD RLIPILMKSP KVEEEEEEEM3540
 3541 EKQPDPLHQI ILHFSRNALT ERSKLEDDPL YTSYSSMMAK SCQSGEDEEE EEDKEKTFEE3600
 3601 KEMEKQKTLY QQARLHERGA AEMVLQMISA SKGEMSPMVV ETLKLGIAIL NGGNAGVQQK3660
 3661 MLDYLKEKKD AGFFQSLSGL MQSCSVLDLN AFERQNKAEG LGMVTEEGTR EKVLQNDEFT3720
 3721 RDLFRFLQLL CEGHNSDFQN FLRTQMGNTT TINVIISTVD YLLRLQESIS DFYWYYSGKD3780
 3781 IIDESGQHNF SKALAVTKQI FNSLTEYIQG PCIGNQQSLA HSRLWDAVVG FLHVFANMQM3840
 3841 KLSQDSSQIE LLKELLDLLQ DMVVMLLSLL EGNVVNGTIG KQMVDTLVES STNVEMILKF3900
 3901 FDMFLKLKDL SSSDTFKEYD PDGKGIISKK EFQKAMEGQK QYTQSEIDFL LSCAEADEND3960
 3961 MFNYVDFVDR FHEPAKDIGF NVAVLLTNLS EHMPNDSRLK CLLDPAGSVL NYFEPYLGRI4020
 4021 EIMGGAKKIE RVYFEISESS RTQWEKPQVK ESKRQFIFDV VNEGGEQEKM ELFVNFCEDT4080
 4081 IFEMQLASQI SETDSAERPD EEEEEDEDSS YVLEIEGEEE DDKSFESASA FAMACASVKR4140
 4141 NVANFLKKAT LKNLRKQYRK VKKMTVKELV KVFFSFFWML FVGLFRLFFT ILGGIFQILW4200
 4201 NTVFGGGLVE GAKNIRVTKI LGDMPDPTQF GIHDDALDAE RAEVTEPGVP PELIHFVKGE4260
 4261 KGDADIMSDL FGFHPKKEGG LKHGPEGGLG DLSEIIGKDE PPTLESTVRK KRKAQAAEMK4320
 4321 AAHEAEGKVE PEKTDLEDGE KEDTAKEEEQ AEALWADVTK KKKRRRGQKV EKPEAFMANF4380
 4381 FKGLEIYQTK LLHYLARNFY NLRFLALFVA FAINFILLFY KVTEEPVEEE TEDVANLWNS4440
 4441 FTDEEEEEAM VFFVLQESTG YMAPALRALA IIHTVISLVC VVGYYCLKVP LVVFKREKEI4500
 4501 ARKLEFDGLY ITEQPSEDDI KGQWDRLVIN TPSFPNNYWD KFVKRKVINK YGDLYGAERI4560
 4561 LELLGLDKNA LDFSPVEASK AEAASLVSWL SSIDMKYHIW KLGVVFTDNS FLYLAWYTTM4620
 4621 SVLGHYNNFF FAAHLLDIAM GFKTLRTILS SVTHNGKQLV LTVGLLAVVV YLYTVVAFNF4680
 4681 FRKFYNKSED DDEPDMKCDD MMTCYLFHMY VGVRAGGGIG DEIEDPAGDP YEMYRIVFDI4740
 4741 TFFFFVIVIL LAIIQGLIID AFGELRDQQE QVREDMETKC FICGIGNDYF DTTPHGFETH4800
 4801 TLQEHNLANY LFFLMYLINK DETEHTGQES YVWKMYQERC WDFFPAGDCF RKQYEDQLG

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle